PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0458s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 323aa    MW: 36393.5 Da    PI: 6.755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0458s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  lv +++ +G+g+W++++   g+ R+ k+c++rw +yl
  Kalax.0458s0002.1.p 14 KGPWTPEEDIVLVSYIQDHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding43.76.3e-1467112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T  E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Kalax.0458s0002.1.p  67 RGNFTSHEEGMIIHLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.083965IPR017930Myb domain
SuperFamilySSF466892.16E-2911108IPR009057Homeodomain-like
SMARTSM007175.0E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001676.31E-101661No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2465116IPR009057Homeodomain-like
SMARTSM007176.5E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129417.86566116IPR017930Myb domain
PfamPF002494.8E-1267112IPR001005SANT/Myb domain
CDDcd001671.39E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRPPCCDKD GVKKGPWTPE EDIVLVSYIQ DHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TSHEEGMIIH LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLDNRY  120
QQTMEQPHHH YLINSSQQLH HPSNNMGAAS SSTSSSNNGV ITCVHNNYSP SPLLHATTNS  180
SSLTSSSYYA SSTENISRLL EGWMRTSPKT NNKQLIIRSS RSEHESSCED LIVDEAVVVP  240
NKDDDTAGHE MTMWAKGRSE CFDKEMMMMM KQQLDEEGGN DSSHGHQHHN NPPFSIFEKW  300
LFEESSNSGG GQVEEMQLSP IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895424.11e-105myb-related protein 306
SwissprotB3VTV72e-99MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2C9VAH61e-101A0A2C9VAH6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_73.131e-105(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-88myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]