PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0453s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 125aa MW: 14107.6 Da PI: 10.4537 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.3 | 3.1e-21 | 23 | 69 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r +tfskR++gi+KKA+E+Sv+C+a+v+ i+fs+ gk y + Kalax.0453s0005.1.p 23 IEDKEDRVITFSKRKAGIFKKASEISVMCGAKVLFILFSPVGKAYSF 69 9******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-27 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.39 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-26 | 14 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-17 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-21 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-17 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-17 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEMAAADTKK MTKGRQKIQM RLIEDKEDRV ITFSKRKAGI FKKASEISVM CGAKVLFILF 60 SPVGKAYSFG HPSVKSVADK FLGREESDGG KQIRQILENH LNKRLQKLVL HHFVAKSELE 120 AACEQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q4PSU4 | 3e-22 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 5e-26 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0453s0005.1.p |
Publications ? help Back to Top | |||
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