PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0451s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 657aa MW: 72838.6 Da PI: 10.0269 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 540 | 589 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + k+Rt ++k++w ++ Kalax.0451s0051.1.p 540 RRPFSVSEVEALVQAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 589 678999********************8877779**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.46E-6 | 346 | 436 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.655 | 350 | 420 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.812 | 535 | 594 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-7 | 539 | 592 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 540 | 590 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-15 | 541 | 622 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.02E-17 | 541 | 591 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MVFQKRLDYG FSGYQVPPTP RAARSARRRA TSFKKKVDEN QMCAFDLLAT LAGKILLEGE 60 KSVGVGRCEV EQNSKKQQSL PHKSLKVEPH DCSSYQPSHK STNNASEVHN PEPTLKLSPP 120 CSIKGSSDSG HLGHPSKVKA AAFQPDPLIK PEVDKAIKSE PPVKPAVGVE AGTYSCSKFE 180 VRKLEPEPPP HSGSAANAPP LYGDHATGDT SRVKTVSRDD DEKSSGCTTH PSTLSKPYMS 240 SPPRIVDRRI RKFLAYKYWN VAPKLKDGEE AHHTDVDKQR RCCFRRQRSQ RNYPFKKRKM 300 YCHGSLSNSD DGATDKQMPC SNIDAFRSVV GTSSSIMGEN VRFKRRDSHV KLRIKSFRVP 360 ELFIEISEMA TVSSLKRTVM EAVTAILGDG LRVGVLLHGK KIGDDSKTLL QTGISHDNQL 420 DSIGFSLEPN TSPNPPSLAS ANSPHILPSE TPQPLTRYVS QEVRRGDAAD MSLDPPLTSI 480 GNFVESDHDS APSPDLTVDK YVANSRAIVP VQAMKMEAAP APPPNHRKSK HSEAGQRRIR 540 RPFSVSEVEA LVQAVEKLGT GRWRDVKLQA FDNAKHRTYV DLKDKWKTLV HTAKISPQQR 600 RGEPVPQELL DRVLDAHAYW SLQQAKQQLK HQRETRMFLE LEPAPAPAAA HNRNCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-53 | 524 | 630 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 298 | QRNYPFKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002283389.2 | 0.0 | PREDICTED: telomere repeat-binding protein 5 | ||||
TrEMBL | F6GV03 | 0.0 | F6GV03_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g04940.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-110 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0451s0051.1.p |