PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0446s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 378aa    MW: 43247.3 Da    PI: 5.7185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0446s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.5e-55101382129
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Kalax.0446s0004.1.p  10 PPGFRFHPTDEELVGYYLKKKVAAQKIDL-DVIRDIDLYRIEPWDLQEkcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 98 
                          9****************************.9***************953543344677******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Kalax.0446s0004.1.p  99 DKAVYD-KRKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-596158IPR003441NAC domain
PROSITE profilePS5100558.7749158IPR003441NAC domain
PfamPF023651.5E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDQCVESCIP PGFRFHPTDE ELVGYYLKKK VAAQKIDLDV IRDIDLYRIE PWDLQEKCWI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKRKLIG MRKTLVFYKG  120
RAPNGQKSDW IMHEYRLETD ENGPPQEEGW VVCRTFKKRT TTSKPKSIIT GPAWDSSAFF  180
YDESGGSSSV IDSPLDYITM QKHQPLQSTS FLSQNFFCKQ ELELSENNPI ITNNSSLIKS  240
QNHQFVQLPQ LESPSLPVLK RPSSSLSLIS DDNDKNKKNE AYHISSSKVT DWRALDKFVA  300
SQLSQGDNYE IDHPGNQMIP AGFGTLQDEE AFQVTMQNGD KLVFNDGRND RLNNGFYLGS  360
NDRNPESDNT GICIFES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-50216410171NO APICAL MERISTEM PROTEIN
1ut4_B5e-50216410171NO APICAL MERISTEM PROTEIN
1ut7_A5e-50216410171NO APICAL MERISTEM PROTEIN
1ut7_B5e-50216410171NO APICAL MERISTEM PROTEIN
3swm_A6e-50216413174NAC domain-containing protein 19
3swm_B6e-50216413174NAC domain-containing protein 19
3swm_C6e-50216413174NAC domain-containing protein 19
3swm_D6e-50216413174NAC domain-containing protein 19
3swp_A6e-50216413174NAC domain-containing protein 19
3swp_B6e-50216413174NAC domain-containing protein 19
3swp_C6e-50216413174NAC domain-containing protein 19
3swp_D6e-50216413174NAC domain-containing protein 19
4dul_A5e-50216410171NAC domain-containing protein 19
4dul_B5e-50216410171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090380.11e-159NAC domain-containing protein 37-like
RefseqXP_028090381.11e-159NAC domain-containing protein 37-like
RefseqXP_028090382.11e-159NAC domain-containing protein 37-like
RefseqXP_028090383.11e-159NAC domain-containing protein 37-like
SwissprotQ9SL411e-137NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2K1ZMJ01e-154A0A2K1ZMJ0_POPTR; NAC family protein
TrEMBLE5KUH91e-154E5KUH9_POPTR; Transcription factor
STRINGVIT_04s0023g03110.t011e-153(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-134vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]