PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0445s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 348aa MW: 39621 Da PI: 8.7258

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0445s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.6	5.9e-50	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrFhPtdeelv +yL++kve+k+l++ e ik++d+yk++PwdLp ++v +++++wyfF+ r +ky+++ r+nr+t sg+Wkatg d Kalax.0445s0023.1.p 14 MLPGFRFHPTDEELVAFYLRRKVENKQLSI-ELIKQIDLYKYNPWDLPtASVGTNDQQWYFFCLRGRKYRNSVRPNRVTGSGFWKATGID 102 579*************************.89***********778899999***************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Kalax.0445s0023.1.p 103 KPIYSFkqPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 143 96444556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-53	13	179	IPR003441	NAC domain
PROSITE profile	PS51005	52.833	14	180	IPR003441	NAC domain
Pfam	PF02365	4.1E-25	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MSTSDKKQDE DEVMLPGFRF HPTDEELVAF YLRRKVENKQ LSIELIKQID LYKYNPWDLP 60 TASVGTNDQQ WYFFCLRGRK YRNSVRPNRV TGSGFWKATG IDKPIYSFKQ PHECIGLKKS 120 LVYYRGSAGK GTKTDWMMHE FRLPPQRKNS AGQQQNSSLA KSSNITLEAE VWTLCRIFKR 180 VSSYKKYIPS THPQLQQLNF ASSVTDSSSK TCSNESDHNN DNGSSEFHVS IADHSHSHSS 240 YKSISSPPSI ALQQNHFATA ATTQTHHQLS LFTCSDAFDH HHRQQQRNSS DLRISNSASS 300 AGFWNASGDL MFAGDIFGGD WDELRSVVDP YAIDFSLPDR RLYYNCK*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MSTSDKKQDE DEVMLPGFRF HPTDEELVAF YLRRKVENKQ LSIELIKQID LYKYNPWDLP  60
TASVGTNDQQ WYFFCLRGRK YRNSVRPNRV TGSGFWKATG IDKPIYSFKQ PHECIGLKKS  120
LVYYRGSAGK GTKTDWMMHE FRLPPQRKNS AGQQQNSSLA KSSNITLEAE VWTLCRIFKR  180
VSSYKKYIPS THPQLQQLNF ASSVTDSSSK TCSNESDHNN DNGSSEFHVS IADHSHSHSS  240
YKSISSPPSI ALQQNHFATA ATTQTHHQLS LFTCSDAFDH HHRQQQRNSS DLRISNSASS  300
AGFWNASGDL MFAGDIFGGD WDELRSVVDP YAIDFSLPDR RLYYNCK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-48	16	186	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-48	16	186	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-48	16	186	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-48	16	186	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	16	186	22	174	NAC domain-containing protein 19
3swm_B	1e-47	16	186	22	174	NAC domain-containing protein 19
3swm_C	1e-47	16	186	22	174	NAC domain-containing protein 19
3swm_D	1e-47	16	186	22	174	NAC domain-containing protein 19
3swp_A	1e-47	16	186	22	174	NAC domain-containing protein 19
3swp_B	1e-47	16	186	22	174	NAC domain-containing protein 19
3swp_C	1e-47	16	186	22	174	NAC domain-containing protein 19
3swp_D	1e-47	16	186	22	174	NAC domain-containing protein 19
4dul_A	7e-48	16	186	19	171	NAC domain-containing protein 19
4dul_B	7e-48	16	186	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450662.1	1e-111	transcription factor JUNGBRUNNEN 1 isoform X2
Swissprot	Q9SK55	4e-91	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3N7FY66	1e-109	A0A3N7FY66_POPTR; Uncharacterized protein
STRING	VIT_12s0028g00860.t01	1e-107	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-84	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Kalax.0445s0023.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]