PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0441s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 342aa    MW: 37240.6 Da    PI: 7.8456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0441s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46e-28171231259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+ gs+fpr+Y+rCt++   +Cp+kk+v+r +edp+++++tY+++H+++
  Kalax.0441s0025.1.p 171 EDGFTWRKYGQKEILGSRFPRAYFRCTHQklyHCPAKKQVQRLDEDPDTFQVTYRSDHTCH 231
                          7****************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26166231IPR003657WRKY domain
SuperFamilySSF1182901.57E-24168232IPR003657WRKY domain
SMARTSM007741.5E-35170232IPR003657WRKY domain
PfamPF031065.9E-25171231IPR003657WRKY domain
PROSITE profilePS5081119.738171233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDDAVISMIL RGCELARRLE ASLPSMAVAS LTESCGEIIR AFAAAREKLS GYQQASAFDS  60
RQGAEEWLMR SGYGRGIIMD QHVMMQSHDD ERDLHVNMEA GQGASRVPDQ PAAVAGPSAS  120
RAAVGGSGSF QAGQHVSRSS TSRPRRNERR DGRRTVRVAA PRIGNTEIPP EDGFTWRKYG  180
QKEILGSRFP RAYFRCTHQK LYHCPAKKQV QRLDEDPDTF QVTYRSDHTC HLSATAPGPP  240
PNSSLALPPA IISEQQHSIA PTASARAAWL SMGIGCGGSR PTSDPRAHSY DGYSYQPVID  300
MADTMFNSGS SGTPCMDQIF SSAVEDVEWD QVGDLKGKKH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-19171230968OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-45WRKY DNA-binding protein 55