PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0434s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 288aa    MW: 32332.8 Da    PI: 9.4893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0434s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28127185259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkk+v+rs ed+ ++++ Yeg+Hnh 
  Kalax.0434s0025.1.p 127 RDGYQWRKYGQKVTKDNPSPRAYFRCAMApTCPVKKRVQRSVEDEMILVVSYEGHHNHG 185
                          7***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-27121186IPR003657WRKY domain
SuperFamilySSF1182902.88E-24123186IPR003657WRKY domain
SMARTSM007741.7E-32126186IPR003657WRKY domain
PfamPF031061.5E-23128184IPR003657WRKY domain
PROSITE profilePS5081124.478128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDRVAAISSR KITMDEGVVE EMRKENARLR HIVKHLQGEA DDGMSRKRRA AAAALDDDHH  60
QLIMMQPYGG SSSMSDDYCY GASAMMNNGV KRPRIMRGLQ VPTMGGSKAY QMFVRTHDNK  120
DKSLTVRDGY QWRKYGQKVT KDNPSPRAYF RCAMAPTCPV KKRVQRSVED EMILVVSYEG  180
HHNHGKSTPE PECLPIQAPE NGATIHMSPF HRPTVTLDLS LSGPSSSGKT DQETRSCRRN  240
LFNKSDEFMN EEIVKEYVAS LTRDPNFSMA LAMAVARSIP DMSARRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181261841471WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.13e-40WRKY DNA-binding protein 18