PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0432s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28863.2 Da PI: 6.372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll+++v+++G ++W+ +a+ g++Rt+k+c++rw +yl Kalax.0432s0012.1.p 8 KGPWTEQEDYLLANVVNLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Kalax.0432s0012.1.p 61 RGKMTAHEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.16 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.02E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.182 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.97E-12 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MATEEIRKGP WTEQEDYLLA NVVNLFGDRR WDFVAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTAHEER LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QEQKQTITPS 120 TALSDSSSSS NPTQESLSPD REKESFYDAV GFDAEFSLNG NKQAEEIVDR VYSMDDIWED 180 IDKAKESHIS QLYNSFNEGS SLYCPMTVSP VRDYCSGSLW KMDDGESKMF LPSTNQFPSY 240 YDLSEAPSYG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-27 | 5 | 110 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 5 | 110 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019076057.1 | 5e-99 | PREDICTED: transcription factor MYB59 | ||||
Swissprot | Q4JL84 | 3e-84 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A438G1I0 | 1e-97 | A0A438G1I0_VITVI; Transcription factor MYB59 | ||||
TrEMBL | F6GV45 | 1e-97 | F6GV45_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 2e-98 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-83 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0432s0012.1.p |
Publications ? help Back to Top | |||
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