PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0428s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 565aa    MW: 62840 Da    PI: 6.7899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0428s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23122221398
                          EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k+lt+sd+++ g +++p+++ae++       + ++ +s  lt++d +g +W +++iyr++++r++lt+GW++Fv+ ++L +gD+v+F++d
  Kalax.0428s0022.1.p 122 KILTQSDANNGGGFSVPRQCAESIfpalnyeEDPPVQS--LTITDVQGGEWIFRHIYRGTPKRHLLTTGWSKFVNNKKLVAGDTVIFMRD 209
                          89**************************9976666675..9999********************************************65 PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          +  +++l+++++r
  Kalax.0428s0022.1.p 210 N-LTGKLYIGIRR 221
                          4.89999999997 PP
2Auxin_resp66.87.5e-23267351183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgv.sdldpvrWpnSkWrsLk 83 
                          aa++as++  Fev+ +P+++ s+Fvv+++ v +al+ +++vG+R+kma+e+edss+ +l +G v+ v + l+  +W+ S+W++L+
  Kalax.0428s0022.1.p 267 AAKQASKGLHFEVILYPSVGLSDFVVNADVVDRALSWRWAVGTRVKMAVESEDSSRPTLlQGYVSIVlNVLEGGQWRSSPWKMLQ 351
                          78999****************************************************999**998762567889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-27117229IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-17120223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041120223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-31121221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-20121221No hitNo description
PfamPF023621.3E-20122221IPR003340B3 DNA binding domain
PfamPF065073.5E-19267351IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MFPINFPATQ TVLVDSDLWK TCAGDTFKVP SIDTSVYYFP EGHAALCDSP PPVAQLVCPI  60
VPCRVLHFRF FADRTTDEVF AAVSLQPVGC EYRWAPPASR SVSGRQIGGA EREGRRIESN  120
MKILTQSDAN NGGGFSVPRQ CAESIFPALN YEEDPPVQSL TITDVQGGEW IFRHIYRGTP  180
KRHLLTTGWS KFVNNKKLVA GDTVIFMRDN LTGKLYIGIR RLLRANSGRN GKRSLCVGEA  240
EGTGEEMDDG SWRAGSRRVS ARFVEAAAKQ ASKGLHFEVI LYPSVGLSDF VVNADVVDRA  300
LSWRWAVGTR VKMAVESEDS SRPTLLQGYV SIVLNVLEGG QWRSSPWKML QVTWIEPDHL  360
QNVERLSPWQ VEYVEHTASG QPIHLPIEVR DPHIFQPLTA RTKEPRPMMG QEPHSMMAQG  420
DLRYSRLRTR NFLNPNIHLA SMQGARHLSD VSDVIGGDTH PMQNEDMFPR SDMFVFRSRI  480
TEVKSRGYQL CSLPAESHSS LCSFGTEIGN TLPPGGINSI QLFGKIIYVE NPVENQPHDA  540
SFLVSDSSKG DNESEGMENQ SRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-53837245388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-118auxin response factor 17