PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0427s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 298aa    MW: 32653 Da    PI: 7.7439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0427s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10209252755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  Kalax.0427s0012.1.p 209 IAAKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 252
                          5679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12203260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-12204256No hitNo description
SuperFamilySSF474592.49E-13204261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7210252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MALDSRAHQP HSNSNPSSYY AFGSSSSSAH QHHQVDLYNK DSSLSQVGFH HRRTAKGNDN  60
YLKLHQQGGH MIQGGGAGGK VLSDSNDGSL ITFEDCNEAG GHNYEQNSNT CHNSECFNNS  120
HQTVSSMDSH ILGGANRSHH LKGKLNNRDD MLDWFYSPEA ADNDHTAVHK PPNMDECYMP  180
PNKKQCTSTS TTKKSKPKPA AAAKDPQSIA AKNRRERISE RLKILQELVP NGTKVDLVTM  240
LEKAISYVKF LQLQVKVLAA DEFWPVQGGK APDLSQVKDA IDAILSSQRS DRNSASD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5E7942e-60A0A2P5E794_TREOI; Basic helix-loop-helix transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-53ROOT HAIR DEFECTIVE6