PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0425s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 498aa MW: 55629 Da PI: 5.1465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0425s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.2e-13	299	345	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR++++ +f Lr+l+P+ K++K++iL +++Y+k+L+ Kalax.0425s0019.1.p 299 NHVLAERRRREKLKRRFLVLRSLVPTT-----AKVDKISILDDTIKYLKELE 345 6899********************6.....5**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.323	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-17	297	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-17	299	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-10	299	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-14	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MFFFSLWQTV ACFPVPGGVV ELGVTEKVFS VLLLNSGLLK LHHDKLKLCF LQVSEDAGLI 60 QRITDCLMDI STVSKRSDDV STQRPSNSTD RVTSALNILD TQLVVSPHTS TSDPFGLAEL 120 DDSFIVESIS EEAVLLQNWQ FMEDDDDLNQ YVHDPGNSAS KMTLVSAKVD RQSPLKPQEC 180 NQMKDTTTGD LLGDEMHYQS VISAILQTSV VGPHYGDTNK ASSFVSFRKE EFAGITKSAT 240 PQRILKKVLT QVPKMHSEGL LGPPEKDHKN VIQKGCDDTY LPEAEDLIDM DLPEETGLNH 300 VLAERRRREK LKRRFLVLRS LVPTTAKVDK ISILDDTIKY LKELERKIDE LESAKETAAN 360 TETTMVTKSA QDGTKETSSY NYEVEETHIA SKKRRKAFDT GGNNINRRAS SKRECNDDLV 420 VEVEDKDVRV EVRCGWREGL VPEVMEALSD LDLESTSVCT RSSDGILYLK ITSKAQGLKV 480 ASAKLIKQEM ERIVHNR*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MFFFSLWQTV ACFPVPGGVV ELGVTEKVFS VLLLNSGLLK LHHDKLKLCF LQVSEDAGLI  60
QRITDCLMDI STVSKRSDDV STQRPSNSTD RVTSALNILD TQLVVSPHTS TSDPFGLAEL  120
DDSFIVESIS EEAVLLQNWQ FMEDDDDLNQ YVHDPGNSAS KMTLVSAKVD RQSPLKPQEC  180
NQMKDTTTGD LLGDEMHYQS VISAILQTSV VGPHYGDTNK ASSFVSFRKE EFAGITKSAT  240
PQRILKKVLT QVPKMHSEGL LGPPEKDHKN VIQKGCDDTY LPEAEDLIDM DLPEETGLNH  300
VLAERRRREK LKRRFLVLRS LVPTTAKVDK ISILDDTIKY LKELERKIDE LESAKETAAN  360
TETTMVTKSA QDGTKETSSY NYEVEETHIA SKKRRKAFDT GGNNINRRAS SKRECNDDLV  420
VEVEDKDVRV EVRCGWREGL VPEVMEALSD LDLESTSVCT RSSDGILYLK ITSKAQGLKV  480
ASAKLIKQEM ERIVHNR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	308	ERRRRE
2	304	309	RRRREK
3	391	395	KKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	9e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0425s0019.1.p