PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0417s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 582aa    MW: 64143.9 Da    PI: 4.9123
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0417s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.71.8e-1402175761374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cA+a+++++l+ a++l++++  la++++ +m+++a+yf+eALa+r+++    +y    p+e+   n s +   l  f+e++P+
  Kalax.0417s0012.1.p 217 LVHTLMACADAIQQSNLKVAETLINQIGMLAASQAGAMRKVATYFAEALARRIFN----CY----PQESI--NPSFTDLLLMHFYETCPY 296
                          689***************************************************9....44....33333..22333333446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea++++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+ ++k++l+e+g rLa++Ae+++v+fef+ 
  Kalax.0417s0012.1.p 297 LKFAHFTANQAILEAFSNKKKVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSLDNKDRLREVGLRLAQLAETIHVDFEFRG 386
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L++kp   E++aVn+v++lhrll++++++e+    vL ++k+++P++v+vveqea+hn++ Fl+rf+e+l+yys++f
  Kalax.0417s0012.1.p 387 FVANSLADLDASMLELKPseTESVAVNSVFELHRLLARPGAVEK----VLTVIKEIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTMF 472
                          ******************99999*********************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +   ++++++++++++lgr+i+nvvaceg +r+erhetle+Wr+r+++aGF++v+++++a kqa++ll  ++ +dgyrvee++g+
  Kalax.0417s0012.1.p 473 DSLEGS---TNSQDKVMSEVYLGRQICNVVACEGLDRVERHETLEQWRARFGSAGFESVHIGSNAFKQARMLLDLFAgGDGYRVEENNGC 559
                          ***999...79999**************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Kalax.0417s0012.1.p 560 LMLGWHTRPLIATSAWR 576
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011293.7E-3442115No hitNo description
PfamPF120412.0E-3542108IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.059191555IPR005202Transcription factor GRAS
PfamPF035146.1E-138217576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MKRENQYLYP HPDPSAAGSS SSTGGKTKVC WEDDSLPEAG MDELLAVLGY KVKSSDMAEV  60
AQKLEQLEEV MGSVREDGLS HLASETVHYN PSDISNWIEN MLSEFVPPSF DSNLQPLPPT  120
SIDSFIPQVG PVDFPVMLDQ PKLSPIFGGG DSSSSLPDYD LKAIPGNRII YPQQQMEELS  180
SSANKRLKPT VPPTEAPLTT STRPVVLVDS QEAGVRLVHT LMACADAIQQ SNLKVAETLI  240
NQIGMLAASQ AGAMRKVATY FAEALARRIF NCYPQESINP SFTDLLLMHF YETCPYLKFA  300
HFTANQAILE AFSNKKKVHV IDFSMNQGMQ WPALMQALAL RPGGPPAFRL TGIGPPSLDN  360
KDRLREVGLR LAQLAETIHV DFEFRGFVAN SLADLDASML ELKPSETESV AVNSVFELHR  420
LLARPGAVEK VLTVIKEIKP EIVTVVEQEA NHNGPVFLDR FTESLHYYST MFDSLEGSTN  480
SQDKVMSEVY LGRQICNVVA CEGLDRVERH ETLEQWRARF GSAGFESVHI GSNAFKQARM  540
LLDLFAGGDG YRVEENNGCL MLGWHTRPLI ATSAWRIGSS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6521257514378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594609.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9UFS90.0A0A2C9UFS9_MANES; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein