PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0411s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 271aa    MW: 29969.4 Da    PI: 9.2189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0411s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-093863127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ykt+lC +f++ G C+ G +C+FaHg+
  Kalax.0411s0028.1.p 38 YKTKLCANFMA-GRCNNGRNCSFAHGR 63
                         9**********.*************96 PP
2zf-CCCH17.28.9e-0698121225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k+ +C+ ++ +  C+yG++C F H
  Kalax.0411s0028.1.p  98 KMQPCKIYQSGKVCPYGEKCIFQH 121
                          8899******99**********99 PP
3zf-CCCH37.93e-12161187127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+ C  +  tG C++Gd+C+FaHg+
  Kalax.0411s0028.1.p 161 WKTKTCTKYETTGRCPFGDTCHFAHGQ 187
                          8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.1E-143569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-83668IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-53763IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3753764IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-73863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-696124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-596121IPR000571Zinc finger, CCCH-type
SMARTSM003560.01696123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.20297124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-10157191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-15159192IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821160188IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9161187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSSRLNAAAD SDVIVITAGL PEDHRPVVVN QSKSNMFYKT KLCANFMAGR CNNGRNCSFA  60
HGREDMRFPP PNWRQLVAQG GDHAHVSRTS GENKEHKKMQ PCKIYQSGKV CPYGEKCIFQ  120
HEYPRKSEPN EYKARADKAT AGARSDDAAR DEDKYAKFSY WKTKTCTKYE TTGRCPFGDT  180
CHFAHGQAEL QAPGGHNQTR FSSLQPPATS PVRAAPPPID GSAAGGSRDP DDSSSHSYRI  240
GPRVNWIARE KGLHKISRVY GDWPDMPPPN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-40C3H family protein