PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0408s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 416aa    MW: 45102.9 Da    PI: 8.8327
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0408s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding483e-155296147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+eE+ ++++a k++G   W+ I  ++g ++t+ q++s+ qk+
  Kalax.0408s0037.1.p 52 REKWTEEEHHKFIEALKLFGRA-WRQIEDYIG-TKTAVQIRSHAQKF 96
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-1546102IPR009057Homeodomain-like
PROSITE profilePS5129420.12447101IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-849104IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-165099IPR006447Myb domain, plants
SMARTSM007174.6E-115199IPR001005SANT/Myb domain
PfamPF002494.7E-135295IPR001005SANT/Myb domain
CDDcd001672.02E-85497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
METVQKPTSG IGNSITSIAT GSNSHSVSCE TNLDGSGVAL KVRKPYTISK QREKWTEEEH  60
HKFIEALKLF GRAWRQIEDY IGTKTAVQIR SHAQKFFSKV TKEGANSAEA SNEAIKIPPP  120
RPKRKPSHPY PRKLAEAPNK TRSCPNIQEN GTSSNLKTME RKAQSPTSVL SPEGSHTSTP  180
HLKGQGSGSV TPTSSGSNLS HVLDMDSLTK NNSTLEEKER DISLTLTLSV PSLNASTIMH  240
AGKEFKGAEL TNDDNVYLET ETMFVGGGDT PLTTIKLFGH TVVVTKPLEL SAGMENVVRH  300
IATRDLLMFS DLHLNPLVSK GSHAYVSSPG LGLGLDGQLV PSETMMGERS RERGSKTLSF  360
NGSSSDSINK MEIAEIDQDS AESVIKTSHP PILNPSEYMK GFVPYKRCVS VKLCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.16e-34MYB_related family protein