PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0400s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GeBP
Protein Properties Length: 262aa    MW: 28940.7 Da    PI: 10.2502
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0400s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57361.91.6e-1916744098
               DUF573 40 fvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98
                          vk++++++++k+qlveK+rrLKkK+++  ++++ gke++f+++hdq +fe++ kiWg+
  Kalax.0400s0015.1.p 16 RVKSKLQLDFNKNQLVEKLRRLKKKYRNVLARVSLGKEVQFKSPHDQATFEIATKIWGT 74
                         69*******************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-171673IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFIIIKRRKN LTTDSRVKSK LQLDFNKNQL VEKLRRLKKK YRNVLARVSL GKEVQFKSPH  60
DQATFEIATK IWGTPQSSHS SKDQIHQQHQ QMRGVDVDDD MPPNLNPASA NLNLNVASNF  120
NNFNSSGGYS NHHHHSDRLA ADERKSQPEQ QKAKKRIRVK MEDSRSLMDQ KGSVVAALAS  180
NLSPAQNPIW QPVTGLSTPS LVEEAVKNKI SPLMYDRYDG SGVGGSGGLG DGIVSPVPLS  240
FASQVNLFGT EVLDDQLICG V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-26DNA-binding storekeeper protein-related transcriptional regulator