PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0395s0027.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 658aa MW: 75128.1 Da PI: 8.2532

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0395s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.9	6.7e-18	64	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Y+eYA+ G++vr ++++k +r++ i+ + + C+++g ++ + + ++ ++r++trtgCka+l++++ +d+ ++v+++++eHn Kalax.0395s0027.1.p 64 VYKEYARISGYQVRLATTQKVTRSDCIKLQYLFCNRQGLHKFRAFNslegdASCGYKRRSSTRTGCKARLVLRLIRDSSYVVSDFVEEHN 153 6**********************9999999*****9999988877777888******************************* PP FAR1 87 Hela 90 H l+ Kalax.0395s0027.1.p 154 HCLT 157 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-15	64	157	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.027	468	504	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	0.0013	476	496	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
INGDTNDDNE ESFTSNAKKD TEAHEHFRLH TLADGTCLWT PICDEKLKPY KGKIFNSLNE 60 GISVYKEYAR ISGYQVRLAT TQKVTRSDCI KLQYLFCNRQ GLHKFRAFNS LEGDASCGYK 120 RRSSTRTGCK ARLVLRLIRD SSYVVSDFVE EHNHCLTSPE YQQFLKSNRS LNFAQQNFIM 180 DCGNIKIGAK KSHKILKEIS GGYANVGAQV IDFKNFKRDF KNFVGNSDAQ IILDRLKSKQ 240 DLCPGFAFDY FVGTDGALQR CFWADSIAKN NFEAFGDCVA FDATYRTNKD KKFLDNLDGI 300 VWNAHYEPDV FESEWARMIE DYKLQDNKWL SDMYEMRANW IPAFFRDIPM GGLLRTTSRS 360 ECENSFFNCF FHPGMSLTEF FMAFDTAMDA QRHRKDQMDH KTTSSEPIIK TSLHIEKQAA 420 EVYTRTIFYD VQHEIIESCL HCHVCSISGD DESKIYGITN EDSIHRVFTV VHHIGSNVAE 480 CSCKNFQRIG LACRHIFLAL KSSGVTEIPD YFISKRWTKK AVHKLDSSSF GDTAETSASR 540 NGSKELWIEL NAAAKSVGCD KQKIDELIET LRTFRDKHSG GIVHMSKQDL FESIIGSPRP 600 TQITVQTPQQ SRNKGCGKRL MSERDKIVEK SKKALRKCAF CGKMVNHDIR NCPDKKL*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

INGDTNDDNE ESFTSNAKKD TEAHEHFRLH TLADGTCLWT PICDEKLKPY KGKIFNSLNE  60
GISVYKEYAR ISGYQVRLAT TQKVTRSDCI KLQYLFCNRQ GLHKFRAFNS LEGDASCGYK  120
RRSSTRTGCK ARLVLRLIRD SSYVVSDFVE EHNHCLTSPE YQQFLKSNRS LNFAQQNFIM  180
DCGNIKIGAK KSHKILKEIS GGYANVGAQV IDFKNFKRDF KNFVGNSDAQ IILDRLKSKQ  240
DLCPGFAFDY FVGTDGALQR CFWADSIAKN NFEAFGDCVA FDATYRTNKD KKFLDNLDGI  300
VWNAHYEPDV FESEWARMIE DYKLQDNKWL SDMYEMRANW IPAFFRDIPM GGLLRTTSRS  360
ECENSFFNCF FHPGMSLTEF FMAFDTAMDA QRHRKDQMDH KTTSSEPIIK TSLHIEKQAA  420
EVYTRTIFYD VQHEIIESCL HCHVCSISGD DESKIYGITN EDSIHRVFTV VHHIGSNVAE  480
CSCKNFQRIG LACRHIFLAL KSSGVTEIPD YFISKRWTKK AVHKLDSSSF GDTAETSASR  540
NGSKELWIEL NAAAKSVGCD KQKIDELIET LRTFRDKHSG GIVHMSKQDL FESIIGSPRP  600
TQITVQTPQQ SRNKGCGKRL MSERDKIVEK SKKALRKCAF CGKMVNHDIR NCPDKKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	9e-35	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Kalax.0395s0027.1.p