PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0389s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 351aa    MW: 39400.4 Da    PI: 7.2029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0389s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.88.3e-27119180159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg+ WrKYGqK+++g  +pr+YYrCt +   gC ++k+v+rs++dp++++itY+g+H ++
  Kalax.0389s0029.1.p 119 LDDGHGWRKYGQKNIQGVIHPRGYYRCTNRhvqGCLATKQVQRSDQDPTIFHITYRGQHSCT 180
                          58**************************988889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-27110181IPR003657WRKY domain
PROSITE profilePS5081122.664114178IPR003657WRKY domain
SuperFamilySSF1182905.36E-24118180IPR003657WRKY domain
SMARTSM007741.6E-35119181IPR003657WRKY domain
PfamPF031061.8E-24120179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEATRSNRPW EQQALINELK QGRELAKQLR NHLNPSTASS QTRQFLVEKI ISSYEKTLAK  60
LNRSSLPVAA SPSDNNTSSS KNSHRSQGFD HHASKKRKAM SRWTEQVQVK SQTGLEGQLD  120
DGHGWRKYGQ KNIQGVIHPR GYYRCTNRHV QGCLATKQVQ RSDQDPTIFH ITYRGQHSCT  180
KSANPTTQPQ QQPDAQQKRT KLFHTHDSFR FSFGVRKEQM SMSLEEEQMF PTFSSFPATS  240
DSKSDDAYVF ISSAEAETED QFMFAAEDSF SPLYICPPTS DSDFYTPCHV AGFGLSQLNV  300
HRSESDLAEA AGSCLNSVSN SPTGVLDLHL DFRTGSATTD FDSTFLFDFE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19119179868OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899819.13e-90probable WRKY transcription factor 53
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-43WRKY family protein