PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0387s0054.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 177aa MW: 20255.1 Da PI: 4.8007 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.1e-31 | 113 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C+ ++Cpvkk+ver++edp++v++tYeg H+h Kalax.0387s0054.1.p 113 LDDGYKWRKYGKKMVKNSPNPRNYYKCSVEKCPVKKRVERDREDPRYVITTYEGVHTHM 171 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-33 | 99 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-28 | 106 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.446 | 108 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-35 | 113 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-24 | 114 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDGNSGDYQY QSMYNSFGYL DFGEASHANF GNNDFLPDYL LDDWFNQSDE PAVTGVELGQ 60 QDPVYQMSEV NGVEGNYYAR NEETDTRESG SSTGRAQGKE KFAFKTKSEI DTLDDGYKWR 120 KYGKKMVKNS PNPRNYYKCS VEKCPVKKRV ERDREDPRYV ITTYEGVHTH MSPSGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-25 | 103 | 174 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-25 | 103 | 174 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022750063.1 | 8e-50 | probable WRKY transcription factor 43 isoform X1 | ||||
Refseq | XP_022997285.1 | 6e-50 | probable WRKY transcription factor 50 isoform X1 | ||||
Swissprot | Q8VWQ5 | 4e-40 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A3R5T0G4 | 5e-52 | A0A3R5T0G4_PAELC; WRKY protein | ||||
STRING | XP_008445519.1 | 6e-48 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-42 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0387s0054.1.p |
Publications ? help Back to Top | |||
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