PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0377s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23037.5 Da    PI: 9.4521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0377s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.9e-221762247
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                         +i++ks+ qvtfskR +g++KKA+EL++LC++e+a+i+fs+ gk +
  Kalax.0377s0056.1.p 17 KIKSKSQLQVTFSKRCAGLFKKASELCTLCGVEIAIIVFSPAGKPF 62
                         69****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.287868IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-28867IPR002100Transcription factor, MADS-box
CDDcd002657.32E-34982No hitNo description
SuperFamilySSF554552.22E-25984IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241764IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MPTRKPSLGR QRVEMTKIKS KSQLQVTFSK RCAGLFKKAS ELCTLCGVEI AIIVFSPAGK  60
PFSFGHPSVE SIVNKFINQS GSKAAAPPQT LTPVEPRPAK AGELNQHLRW LLEQQELEKK  120
KAEMLDELRQ AGQTQFWWEA PVHNLGLHEL QQLQAALEEL KKNVASFTSN PWPSFTSSPQ  180
VSPDAYEYVP APSYPIPSRM TELGFY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.16e-61agamous-like MADS-box protein AGL62
SwissprotQ4PSU46e-49AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A2N9J8T01e-59A0A2N9J8T0_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-39AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]