PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0377s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 226aa MW: 25007.8 Da PI: 8.5903

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0377s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	183	1.2e-56	12	155	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 s +++C+dCGnqak+dC+++RCRtCCksrgf C+thvkstWvpa++rr+ ++q+++ ++++ + ++ ++ +++ +l + + + Kalax.0377s0008.1.p 12 SSRMACHDCGNQAKRDCVYMRCRTCCKSRGFRCQTHVKSTWVPAYRRRHSHTQQQQHHHHQLLDVSSTGQQ-------QHAVQLLNPRGP 94 56899******************************************8766666554444433333222.......345566667777 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 + +s e e +P+e+ s+a+frcv v+s +d e++aYq+avsigGh+fkGiLydqG+e Kalax.0377s0008.1.p 95 NPTSGLE-EGLMFPPEITSSAMFRCVVVRSSEDnVIEQYAYQAAVSIGGHLFKGILYDQGPE 155 7766644.4556*************999945688********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-52	15	155	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.1E-27	17	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-21	106	154	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MRQGVGARSS SSSRMACHDC GNQAKRDCVY MRCRTCCKSR GFRCQTHVKS TWVPAYRRRH 60 SHTQQQQHHH HQLLDVSSTG QQQHAVQLLN PRGPNPTSGL EEGLMFPPEI TSSAMFRCVV 120 VRSSEDNVIE QYAYQAAVSI GGHLFKGILY DQGPELSPTP QHQNPTTAPP PSHHHHHQYL 180 GNEGPSSSTA PPPLEAPDAT AFATQQRPGY NPSPFQTGTH VFFHQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647684.2	4e-51	PREDICTED: protein SHORT INTERNODES
Swissprot	Q9LQZ5	4e-45	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A438I8Z3	6e-50	A0A438I8Z3_VITVI; Protein SHORT INTERNODES
STRING	VIT_03s0038g00310.t01	8e-48	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	6e-47	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0377s0008.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]