PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0373s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 237aa    MW: 27513.7 Da    PI: 9.4755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0373s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-18449147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  Kalax.0373s0015.1.p  4 RGHWRPAEDEKLRELVERYGPHNWNAIAEHLQ-GRSGKSCRLRWFNQ 49
                         899*****************************.***********996 PP
2Myb_DNA-binding55.91e-175699146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         r+++T+eE+e+l+  ++ +G++ W+ Iar+++ gRt++ +k++w+ 
  Kalax.0373s0015.1.p 56 RNPFTEEEEERLLASHRVHGNK-WSVIARMFP-GRTDNAVKNHWHV 99
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.759154IPR017930Myb domain
SMARTSM007178.6E-16352IPR001005SANT/Myb domain
PfamPF002492.3E-18449IPR001005SANT/Myb domain
SuperFamilySSF466892.7E-30497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-28557IPR009057Homeodomain-like
CDDcd001671.49E-14748No hitNo description
PROSITE profilePS5129419.60655105IPR017930Myb domain
SMARTSM007174.2E-1555103IPR001005SANT/Myb domain
PfamPF002499.8E-155698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2158104IPR009057Homeodomain-like
CDDcd001671.30E-115898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGTRGHWRPA EDEKLRELVE RYGPHNWNAI AEHLQGRSGK SCRLRWFNQL DPKINRNPFT  60
EEEEERLLAS HRVHGNKWSV IARMFPGRTD NAVKNHWHVI MARRCRERSR VYARRKAIQA  120
ASLHDQLQSN VHANNFNPFK HNSFSHLLPI FNGFYGASFS QSSGTAKVGH LNLDLIGSRH  180
HHHHHPVEFY NFMNINTNKS SSSEVINHTK EEEEVEQEQK IDVPFIDFLS VDKDSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3331056108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441364.15e-93transcription factor MYB54
RefseqXP_006478100.15e-93transcription factor MYB54
SwissprotQ6R0C43e-80MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A067DID91e-91A0A067DID9_CITSI; Uncharacterized protein
TrEMBLV4VNT61e-91V4VNT6_9ROSI; Uncharacterized protein
STRINGXP_006478100.12e-92(Citrus sinensis)
STRINGXP_006441364.12e-92(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-77myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]