PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0354s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 227aa    MW: 26095.9 Da    PI: 6.6032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0354s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-172168148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Kalax.0354s0015.1.p 21 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 68
                         79********************************************97 PP
2Myb_DNA-binding55.41.4e-1774117146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0354s0015.1.p  74 RGNITPEEHMLILQLHDKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 117
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-231571IPR009057Homeodomain-like
PROSITE profilePS5129417.1271668IPR017930Myb domain
SuperFamilySSF466891.95E-3018115IPR009057Homeodomain-like
SMARTSM007178.1E-132070IPR001005SANT/Myb domain
PfamPF002491.7E-162168IPR001005SANT/Myb domain
CDDcd001672.68E-102368No hitNo description
PROSITE profilePS5129424.69869123IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2472122IPR009057Homeodomain-like
SMARTSM007171.5E-1573121IPR001005SANT/Myb domain
PfamPF002494.0E-1674117IPR001005SANT/Myb domain
CDDcd001672.41E-1278117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDSKRPYFSS SSSSIDPEVR KGPWTMEEDL ILINYIANHG EGVWNSLAKS AGLKRTGKSC  60
RLRWLNYLRP DVRRGNITPE EHMLILQLHD KWGNRWSKIA KHLPGRTDNE IKNFWRTRIQ  120
KYINKQQDEN PPHHQEEDTQ LMMSTCEQVS QASSSQMSTT TTAASSDPNT FDNHHQASYS  180
PQQMFSYPSG NLEPYPNNNG GLPGDINDNM WNMEEFWSIN VVNNHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271512321128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078430.19e-84myb-related protein 305
SwissprotP813912e-80MYB05_ANTMA; Myb-related protein 305
TrEMBLL7RAG46e-82L7RAG4_PETHY; EOBI
STRINGXP_009334094.11e-80(Pyrus x bretschneideri)
STRINGMigut.H00102.1.p2e-80(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-74myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]