PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0350s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27686.6 Da PI: 6.3947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.8e-19 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEd+ll ++v+++G+++W+tIa+ ++ gRt+k+c++rw++ Kalax.0350s0011.1.p 16 RGHWRPEEDQLLRNLVERFGPKNWNTIAEQIQ-GRTGKSCRLRWFNQ 61 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+ +l+ a + +G++ W++Iar+++ gRt++ +k++++ Kalax.0350s0011.1.p 68 KLPFTEEEETRLILAQRAHGNK-WSAIARHFP-GRTDNAVKNHFHV 111 689*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.633 | 11 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-18 | 16 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.86E-30 | 16 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-15 | 19 | 60 | No hit | No description |
PROSITE profile | PS51294 | 17.402 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-11 | 70 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MEGHEGDNDN QGATSRGHWR PEEDQLLRNL VERFGPKNWN TIAEQIQGRT GKSCRLRWFN 60 QLDPNLNKLP FTEEEETRLI LAQRAHGNKW SAIARHFPGR TDNAVKNHFH VIMGRKRKDP 120 NISLPSFTPT LVGGYNIGAP VGPGGMIYEP TFPRYAGSNS FIPGTQNTYP FNFGDIDGSN 180 LICNAPGTLD GNPACSNFNA GAAGGPFGYS GFGSVPGMVG DSSQATNINV AQNEDANPPF 240 IDFLGVESKN QADH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-30 | 16 | 116 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-30 | 16 | 116 | 4 | 104 | C-Myb DNA-Binding Domain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | XP_007152615.1 | 3e-54 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-53 | myb domain protein 52 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0350s0011.1.p |