PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0346s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bZIP
Protein Properties Length: 395aa    MW: 41913.2 Da    PI: 7.7776
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0346s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.81.8e-21302364163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e+++l s++
  Kalax.0346s0012.1.p 302 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENATLRAEVNRIRSEYEQLASQN 364
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-24196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.9E-50135271No hitNo description
Gene3DG3DSA:1.20.5.1704.8E-19296364No hitNo description
PfamPF001704.0E-19302364IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-22302366IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.449304367IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.81E-11305362No hitNo description
CDDcd147021.62E-24307357No hitNo description
PROSITE patternPS000360309324IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSSSDVEKPS KEKESKIVPA GTQEQSSATS TGAVNAEWPV FQAFSPMPAH SYLASSPQPH  60
PYMWGMQHIV PPYGAPPPYV AMYPHHGGIY AHPSMPPGSY PFSPFAIPSP NGMMEASGNT  120
PGAVEADGKS PEGKEKLPIK RSKGSLGSLN MITGKKNDAA KASAASANGG YSKSGESGSE  180
GSTDGSDANS QNDSQLKSGD RQDSLEAETS QNGSSLHSSQ NGGTGAPNTT LNQTMAMVPV  240
APDAPGGVPG PATNLNIGMD YWGAPTTTPI PLLQGKGPSA GVGRANVPGS RDVQPQIWLQ  300
DERELKRQRR KQSNRESARR SRLRKQAECD ELAQRAEALK EENATLRAEV NRIRSEYEQL  360
ASQNASLKER LGENPGNEDT RPSREKQNVR KDTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318324RRSRLRK
2318325RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359655.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-151BZP16_ARATH; bZIP transcription factor 16
TrEMBLM5WAR10.0M5WAR1_PRUPE; Uncharacterized protein
STRINGXP_008238155.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-114basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]