PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0345s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 647aa MW: 71198.5 Da PI: 6.2472 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 446 | 2.5e-136 | 280 | 645 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsev 87 lv+lLl+cAeav+++d +a+++L++l++ ++p gd+mqR+aa+fteAL+arla +++ +++ ++++ ++ s e l+++++++++ Kalax.0345s0036.1.p 280 LVHLLLACAEAVAKEDYMAARRYLQQLNQVVTPLGDSMQRVAACFTEALSARLAAaLTPKPSSSAASQPFNPFPpnSLEILKIYQILYQA 369 68****************************************************9656666655555555433244************** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 +P++kf+h+taNqaI ea+e+e rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs s e++ etg+ L+++A++l+vpfe Kalax.0345s0036.1.p 370 CPYIKFAHFTANQAIFEAFESEMRVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SPEAVMETGRCLTELAHSLHVPFE 455 **************************************************************....9*********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 f++ v ++ledl+ ++L+ + gEalaVn+v +lhr++ +++l + +L ++++ P++v++veqea+hn++ Fl rfleal++ysa+ Kalax.0345s0036.1.p 456 FHP-VGEQLEDLKSHMLNRRVGEALAVNSVNRLHRVP--PHCLGN----LLTMIREQAPNIVTIVEQEASHNGPYFLGRFLEALHCYSAI 538 ***.7*******************************9..888888....***************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 fdsl+a++p++s +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e GFk+vpls++a++q k ll ++ dgyr+ e++g+ Kalax.0345s0036.1.p 539 FDSLDATFPQDSAQRAKVEQYIFAQEIKNIVACEGPERVMRHERLEKWRKIMEGRGFKEVPLSSNAVTQSKILLGLYSCDGYRLTEDKGC 628 ****************************************************************************************** PP GRAS 358 lvlgWkdrpLvsvSaWr 374 l+lgW+dr+++++SaWr Kalax.0345s0036.1.p 629 LLLGWQDRAILAASAWR 645 ****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.292 | 254 | 625 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-134 | 280 | 645 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MNSLRGSLSS LKSEGSSTNT KLQQHQQSFT ASLGELDKPV SSTDLDQTGS SLTLTPSSLN 60 LQGLRFDSGG EVEVQSPDWD SYFADHFDSS DFMISSPALL SPQLVSSYNS CAQGMLTTGC 120 SPPRFAPFGT NHQPKPKGMS PLHKVFNSPS SQFMHIESLT LPAIEEFLND DYSRHDLGAY 180 SLRNAGSSSA MLDHHHAMSM HHQPSRFGRG SGQGSGSTQM GIDQSDVYRM GSMSGCAGVP 240 LSQQLKQEDE QEQQLQHSLN HSLMGTMMAA DQEHDSGLQL VHLLLACAEA VAKEDYMAAR 300 RYLQQLNQVV TPLGDSMQRV AACFTEALSA RLAAALTPKP SSSAASQPFN PFPPNSLEIL 360 KIYQILYQAC PYIKFAHFTA NQAIFEAFES EMRVHVIDLD ILQGYQWPAF MQALAARPGG 420 APFLRITGVG SSPEAVMETG RCLTELAHSL HVPFEFHPVG EQLEDLKSHM LNRRVGEALA 480 VNSVNRLHRV PPHCLGNLLT MIREQAPNIV TIVEQEASHN GPYFLGRFLE ALHCYSAIFD 540 SLDATFPQDS AQRAKVEQYI FAQEIKNIVA CEGPERVMRH ERLEKWRKIM EGRGFKEVPL 600 SSNAVTQSKI LLGLYSCDGY RLTEDKGCLL LGWQDRAILA ASAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-98 | 287 | 644 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-98 | 287 | 644 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-98 | 287 | 644 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021641856.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A438JCX5 | 0.0 | A0A438JCX5_VITVI; DELLA protein GAI1 | ||||
TrEMBL | D7SVL9 | 0.0 | D7SVL9_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0068g01610.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-97 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0345s0036.1.p |
Publications ? help Back to Top | |||
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