PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0339s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 358aa    MW: 40068 Da    PI: 6.2703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0339s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.6e-29139198258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++ g+++prsYYrCt++   +C ++k+v+rs+edp+v+eitY+g+H++
  Kalax.0339s0011.1.p 139 DDGYSWRKYGQKDILGAKYPRSYYRCTYRnikHCGATKQVQRSDEDPTVFEITYKGKHTC 198
                          8***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.068133196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-28134198IPR003657WRKY domain
SuperFamilySSF1182903.53E-25137198IPR003657WRKY domain
SMARTSM007744.3E-38138200IPR003657WRKY domain
PfamPF031063.6E-27139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENWEQQTLI NELAQGMELA KQLRSHVGPS STTETREYLV QKILSSYDKA LLILNWSESS  60
SNGQGRWPQL NVAANLLPES PSSFDGSPHS DASDKGFKHQ HQPQQQDHVN EVSKKRKTQP  120
KWTDHVRIYS ENGLEGPHDD GYSWRKYGQK DILGAKYPRS YYRCTYRNIK HCGATKQVQR  180
SDEDPTVFEI TYKGKHTCVP ECDPNMVPIR QDEEVQRHNN NSNGPKQSHA DDILLHLENT  240
LKVNTEDMSN KEMTRHLPSG STARTMNANY SAADFDGSLM QLSSATSGSN NLPVSPFHQN  300
SSFGGGFGTV CCSESDRSDM FSSNASTTNS PYLDLDFTLY PANPDLTFPF SVPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18139198968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304549.11e-106probable WRKY transcription factor 41
TrEMBLA0A3R5WE401e-112A0A3R5WE40_PAELC; WRKY protein
STRINGPOPTR_0003s13840.11e-105(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-65WRKY family protein