PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0337s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 494aa    MW: 53820.1 Da    PI: 8.3098
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0337s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17168217155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kalax.0337s0029.1.p 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217
                          78*******************......55************************998 PP
2AP242.12.2e-13260310155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a++ a+++ +g
  Kalax.0337s0029.1.p 260 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDVAALRCNG 310
                          89********.7******...5...334336**********99**********99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-9168217IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-16168226IPR016177DNA-binding domain
PROSITE profilePS5103217.846169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-17169225IPR001471AP2/ERF domain
CDDcd000189.88E-12169227No hitNo description
SMARTSM003806.1E-32169231IPR001471AP2/ERF domain
PfamPF008473.7E-9260310IPR001471AP2/ERF domain
CDDcd000187.05E-26260320No hitNo description
SuperFamilySSF541718.5E-17260319IPR016177DNA-binding domain
PROSITE profilePS5103215.857261318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-16261318IPR001471AP2/ERF domain
SMARTSM003803.4E-32261324IPR001471AP2/ERF domain
PRINTSPR003676.6E-6262273IPR001471AP2/ERF domain
PRINTSPR003676.6E-6300320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MWDLNAEMLT DDVPQAQRNV NHQTAERRAR AGRMMDDAGT STSSMIVNAA AAGDEDSNSS  60
NTARTFTFDI IMNSNTSPHH HLQDNIIASS SSLAAANARV FYSAAPNFGD GGVGSRSSSS  120
ATSPKSDWLN LSFADSAEQS EMRLLQQQQQ QQQMPVKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGSDA DINFNIADYQ EDINQMKSLS  240
KEEFVHILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDTEVEAARA  300
YDVAALRCNG SEAATNFEPS TYEGDVASHP NNDASGHELD LSLTIDSSSD YNPKRNESSS  360
HDGNFKGGGP KLVYPTYATG GGQVPSAHSQ PSMPASYPPM SHGLAVHSGG YLPMSYEVME  420
RSVAAVASPR MPNWGWQHSQ GHGSTISRLP PFSSAASSGF SLSSSVTPAT SLASLQLQQP  480
HQSSCYQNNY RKS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312046.11e-126floral homeotic protein APETALA 2 isoform X1
RefseqXP_024463449.11e-126floral homeotic protein APETALA 2 isoform X2
SwissprotB8AMA92e-97AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2K1ZBQ11e-125A0A2K1ZBQ1_POPTR; Uncharacterized protein
TrEMBLB9HLZ71e-125B9HLZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-125(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-89related to AP2.7