PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0335s0053.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 644aa    MW: 70736.7 Da    PI: 4.767
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0335s0053.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS207.86e-644286431218
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+avss+d + a++lL ++++ asp gd +qRla++f+++L+ar+a++++++y + ++++ +    ++ l+a++++ ++ P+
  Kalax.0335s0053.2.p 428 LRTLLVLCAQAVSSDDWRTANQLLRQIRQYASPLGDGTQRLAHCFANGLEARMAGTGNQIYTSRSSRRIT---AADILKAYQVYLHAIPF 514
                          5789*********************************************************887777777...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           ++    aNq+I +a+++++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g   +e++e tg+rL+k+++++gvpfe+
  Kalax.0335s0053.2.p 515 KQIVMSFANQMIFQAASKAQTLHIVDFGILYGFQWPIFIQCLSRREGGPPKLRITGIDLPQPGfrPAERVEDTGRRLEKYCKRFGVPFEY 604
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                           + +ak+++++++e+L++k++E laVn+ ++l++llde+v
  Kalax.0335s0053.2.p 605 YA-IAKKWDTIRIEDLSIKRNEFLAVNCLFRLKNLLDETV 643
                          **.7********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.647402644IPR005202Transcription factor GRAS
PfamPF035142.1E-61428643IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MVMDPYLNGF RGLDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA  60
AADSTLPFFG MSHLRDSASG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK  120
SLYDALGEKY PDRPSVLVDS PDGSTSQSFG FSESGSSGSS NANGASYALN GAYQSDHVPP  180
YQPVSLTQKS VPAADVSQTS SFGTGKGFPL HGFDQGVNDF ESNSSSLKGS GSGNSYSSTF  240
NGFDLNGNGL GNAPVSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV  300
VPEPNEVCLL ASAGRRYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM  360
EDERMNKQSA VYVDEEALSV LFDNVLLHCR VKEEATDSDV CERSPSEKNK NLNETGRDKK  420
QGTDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM  480
AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIVMS FANQMIFQAA SKAQTLHIVD  540
FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEDTGRR LEKYCKRFGV  600
PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-3243563225219Protein SCARECROW
5b3h_D7e-3243563225219Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A314ZFC91e-156A0A314ZFC9_PRUYE; Scarecrow-like protein 14
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-118GRAS family protein