PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0335s0053.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 646aa MW: 70937 Da PI: 4.767 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 208.8 | 3.1e-64 | 428 | 644 | 1 | 219 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d + a++lL ++++ asp gd +qRla++f+++L+ar+a++++++y + ++++ + ++ l+a++++ ++ P+ Kalax.0335s0053.1.p 428 LRTLLVLCAQAVSSDDWRTANQLLRQIRQYASPLGDGTQRLAHCFANGLEARMAGTGNQIYTSRSSRRIT---AADILKAYQVYLHAIPF 514 5789*********************************************************887777777...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++ aNq+I +a+++++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g +e++e tg+rL+k+++++gvpfe+ Kalax.0335s0053.1.p 515 KQIVMSFANQMIFQAASKAQTLHIVDFGILYGFQWPIFIQCLSRREGGPPKLRITGIDLPQPGfrPAERVEDTGRRLEKYCKRFGVPFEY 604 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 + +ak+++++++e+L++k++E laVn+ ++l++llde+v+ Kalax.0335s0053.1.p 605 YA-IAKKWDTIRIEDLSIKRNEFLAVNCLFRLKNLLDETVD 644 **.7*********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.647 | 402 | 646 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-61 | 428 | 644 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MVMDPYLNGF RGLDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA 60 AADSTLPFFG MSHLRDSASG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK 120 SLYDALGEKY PDRPSVLVDS PDGSTSQSFG FSESGSSGSS NANGASYALN GAYQSDHVPP 180 YQPVSLTQKS VPAADVSQTS SFGTGKGFPL HGFDQGVNDF ESNSSSLKGS GSGNSYSSTF 240 NGFDLNGNGL GNAPVSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV 300 VPEPNEVCLL ASAGRRYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM 360 EDERMNKQSA VYVDEEALSV LFDNVLLHCR VKEEATDSDV CERSPSEKNK NLNETGRDKK 420 QGTDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM 480 AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIVMS FANQMIFQAA SKAQTLHIVD 540 FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEDTGRR LEKYCKRFGV 600 PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVDVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-32 | 435 | 632 | 25 | 219 | Protein SCARECROW |
5b3h_D | 7e-32 | 435 | 632 | 25 | 219 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A314ZFC9 | 1e-156 | A0A314ZFC9_PRUYE; Scarecrow-like protein 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-118 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0335s0053.1.p |