PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0335s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 535aa MW: 56949.8 Da PI: 6.2502

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0335s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3e-10	197	241	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar.tmgkgRtlkqcksrw 44 r++WT eEd+ l+ avk+ G g+W+ I r ++ Rt+ q+ rw Kalax.0335s0003.1.p 197 RNPWTDEEDKELIAAVKKCGEGNWANILRgDFNGERTASQLSQRW 241 79*************************983344578888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.08	192	249	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-13	194	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-13	194	246	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-11	196	247	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-8	197	241	IPR001005	SANT/Myb domain
CDD	cd11660	3.66E-15	199	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MTDKESDSKR RKVEITLDDL YCCVFQRYTP SAVITLYQEI AQACANKKID WKELARRTST 60 GITNAREYQM LWRHLAYGHP LHEKIEEEAE LMDDESDLEI DLEAVPQGSA EDLADAHASV 120 QVLLASGPPC DSRMPNTLAA DANLAPNEKQ NGTTSENVQI AGNGSLHVSS QKQLSQVYKS 180 TDGPDANGSN LPFRKKRNPW TDEEDKELIA AVKKCGEGNW ANILRGDFNG ERTASQLSQR 240 WAILKRRNKN LGLGGSNING QQLSQAHLAT RNALSVALNM PVTLTSSVAM SSSTVANSIT 300 AISQTEAFPS TLSVPQVSEG GALCAPLKNR VMLKKPPVPV KPTISSNSML QAAAVAAGAR 360 IATPEDAESL LKAAQAKNAV HIMHGGGAVI KSGSISPLTP HYSGVGMPGT SLSNSSIAMP 420 VVPKLGLPKS QLAMTQSSAT PNTLLEKHPS GPSTEVSTAK QTKATDDEVS MQSSTVPTKL 480 INDSEVADRP KDCHQLNASS TEAEEASHAA SLRSEGNNPV SNEIRSSESA EDGK*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MTDKESDSKR RKVEITLDDL YCCVFQRYTP SAVITLYQEI AQACANKKID WKELARRTST  60
GITNAREYQM LWRHLAYGHP LHEKIEEEAE LMDDESDLEI DLEAVPQGSA EDLADAHASV  120
QVLLASGPPC DSRMPNTLAA DANLAPNEKQ NGTTSENVQI AGNGSLHVSS QKQLSQVYKS  180
TDGPDANGSN LPFRKKRNPW TDEEDKELIA AVKKCGEGNW ANILRGDFNG ERTASQLSQR  240
WAILKRRNKN LGLGGSNING QQLSQAHLAT RNALSVALNM PVTLTSSVAM SSSTVANSIT  300
AISQTEAFPS TLSVPQVSEG GALCAPLKNR VMLKKPPVPV KPTISSNSML QAAAVAAGAR  360
IATPEDAESL LKAAQAKNAV HIMHGGGAVI KSGSISPLTP HYSGVGMPGT SLSNSSIAMP  420
VVPKLGLPKS QLAMTQSSAT PNTLLEKHPS GPSTEVSTAK QTKATDDEVS MQSSTVPTKL  480
INDSEVADRP KDCHQLNASS TEAEEASHAA SLRSEGNNPV SNEIRSSESA EDGK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010664416.1	1e-118	PREDICTED: uncharacterized protein LOC100245507 isoform X1
TrEMBL	F6H140	1e-116	F6H140_VITVI; Uncharacterized protein
STRING	VIT_18s0001g07620.t01	1e-117	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	7e-59	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0335s0003.1.p