PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0327s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 487aa    MW: 53947.7 Da    PI: 7.3806
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0327s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.76.8e-1091094851374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalkl 83 
                          lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La r++  v+ l +    s+++          s+++   l+l
  Kalax.0327s0029.1.p 109 LVQLLIACAEAVACRDKSHASALLSELRAHAVVFGSSFQRVASCFVQGLADRMTLLVQPLGSNGFRSPATM-LglmegveSDKKEEGLSL 197
                          689****************************************************7777776554444443.234555545555555677 PP

                 GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLak 167
                           +e++P ++f+h++aN+ I+ea+ege+ vH++D++++ Gl    QW  L+++La+R+ gpp  +l++T++g     ++++l+++g  L+ 
  Kalax.0327s0029.1.p 198 VYELCPQIQFGHFVANSSIMEAFEGESSVHVVDLGMTLGLpgghQWRQLIHSLANRATGPPkgRLKVTAIGL----HAQKLQAIGGELEV 283
                          **********************************9997644444*************9999889********....99************ PP

                 GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                          +A++++v++ f+  + k le++++e++++ ++E+l+Vn+++qlh +++es    +   +vL+++ +l+Pk +v+veq+++hn++ Fl rf
  Kalax.0327s0029.1.p 284 YAHSMNVNMVFSG-INKCLENIRPEDFDIVEDEVLVVNSIFQLHCVVKESRGALN---SVLRIIHKLQPKTLVLVEQDSNHNGPFFLGRF 369
                          *************.7********************************88877777...8******************************* PP

                 GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                          +eal+yysa+fdsl+a lp+ +  r+k+E+++++++i+n+v+ceg er+erhe++ +Wr+r+++aGF+pvp++  + +qak  +++vk  
  Kalax.0327s0029.1.p 370 MEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEQIKNIVSCEGPERVERHERVDQWRRRMSRAGFQPVPIK--MISQAKQWMARVKlC 457
                          ***********************************************************************96..6899*********99 PP

                 GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                          dg+++ ee+g+l+lgWk++p+v++S+W+
  Kalax.0327s0029.1.p 458 DGHTIVEEKGCLILGWKSKPIVAASCWK 485
                          ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.6783466IPR005202Transcription factor GRAS
PfamPF035142.3E-106109485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MPEEPGTGRD SKRLKRSFSV SESLGSSDTN GCSSYYGSGS VEMSSGSLVR SSSVTSLPRL  60
HFRDHIWTYT QRYLAAEAVE EAVSSFEAEN RMTGGGCEDH QGNKDGMRLV QLLIACAEAV  120
ACRDKSHASA LLSELRAHAV VFGSSFQRVA SCFVQGLADR MTLLVQPLGS NGFRSPATML  180
GLMEGVESDK KEEGLSLVYE LCPQIQFGHF VANSSIMEAF EGESSVHVVD LGMTLGLPGG  240
HQWRQLIHSL ANRATGPPKG RLKVTAIGLH AQKLQAIGGE LEVYAHSMNV NMVFSGINKC  300
LENIRPEDFD IVEDEVLVVN SIFQLHCVVK ESRGALNSVL RIIHKLQPKT LVLVEQDSNH  360
NGPFFLGRFM EALHYYSAIF DSLDAMLPKY DTRRAKMEQF YFAEQIKNIV SCEGPERVER  420
HERVDQWRRR MSRAGFQPVP IKMISQAKQW MARVKLCDGH TIVEEKGCLI LGWKSKPIVA  480
ASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5610348413378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359535.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A192ADG00.0A0A192ADG0_PYRPY; DELLA protein RGL2
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-79RGA-like 1