PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0326s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 317aa    MW: 35730 Da    PI: 6.068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0326s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ed++l + ++++G ++W++ +r  g+ R++k+c++rw +yl
  Kalax.0326s0023.1.p 17 KGPWTSDEDQILTNHINLHGHPNWRALPRLAGLARCGKSCRLRWTNYL 64
                         79********************************************97 PP
2Myb_DNA-binding49.59.8e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e +++ +k+lG++ W++Ia++++ gRt++++k+ w+++l
  Kalax.0326s0023.1.p  70 RGNFTREEEETIINSHKLLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 115
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-21967IPR009057Homeodomain-like
PROSITE profilePS5129414.2081264IPR017930Myb domain
SuperFamilySSF466895.75E-2814111IPR009057Homeodomain-like
SMARTSM007175.8E-111666IPR001005SANT/Myb domain
PfamPF002493.5E-131764IPR001005SANT/Myb domain
CDDcd001673.88E-101964No hitNo description
PROSITE profilePS5129422.74965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2468119IPR009057Homeodomain-like
SMARTSM007171.6E-1369117IPR001005SANT/Myb domain
PfamPF002497.7E-1470115IPR001005SANT/Myb domain
CDDcd001674.83E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVRSPSSTKE QTAGLKKGPW TSDEDQILTN HINLHGHPNW RALPRLAGLA RCGKSCRLRW  60
TNYLQPGIRR GNFTREEEET IINSHKLLGN RWSAIAAKLP GRTDNEIKNV WHTHLKKRLL  120
KNNQNQPQGS TATIGGSHNN RSDDFIIIDE SLFHQARDDH SNTNPLVQHA HADRDDQNPN  180
DAPACNTHSH TIHVPSISPQ DSYSKASYNN CEQVIPSPEA FPETDESFWS EVLSSDYDYR  240
SGSSSMESYH TPCRQQPFLP VSDNIVVNME MDYPQDATGS SFNNFNNNNN AVQDGDDVDD  300
FWFDVLFRAG EHPILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25151195108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-63myb domain protein 15