PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0325s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 300aa    MW: 33464 Da    PI: 5.7167
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0325s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY888.3e-28127187158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dg+nWrKYGqK+++g+++pr+YYrCt++   gC ++k+v+rs+edp ++ +tY+g+H++
  Kalax.0325s0018.1.p 127 VEDGFNWRKYGQKDIQGANHPRGYYRCTHRqqaGCLATKHVQRSDEDPLLFYVTYRGKHTC 187
                          58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-27124188IPR003657WRKY domain
SuperFamilySSF1182908.11E-25126188IPR003657WRKY domain
SMARTSM007741.8E-37127189IPR003657WRKY domain
PROSITE profilePS5081123.284128185IPR003657WRKY domain
PfamPF031069.1E-26128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVMSGRQEEQ IWENYSSKII ASNEIQRGVE AAKNLRILLM HHHHFNLLSN SQLSSSAQVL  60
LEEIISSSER ALTILKSCCQ PGDASVDNIA DCENIHNQQV SKKRKSTMMK FTKQVRVSLE  120
TGFDGTVEDG FNWRKYGQKD IQGANHPRGY YRCTHRQQAG CLATKHVQRS DEDPLLFYVT  180
YRGKHTCYSQ SETPPLLLPN RTANRSDQHY QTTCTTNTKA DADADADVSL PPFPDDIYLL  240
ASSSSLLPED NVGHFDSTGC CFQQDQNSPA GISESQVESC PDSDDGSHVS FDLSNYVLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18127187868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A140H8L96e-43A0A140H8L9_MANES; WRKY transcription factor 15
STRINGcassava4.1_010768m1e-43(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.15e-33WRKY DNA-binding protein 30