PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0324s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 348aa    MW: 37680.3 Da    PI: 6.6529
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0324s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18256289134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Kalax.0324s0006.1.p 256 CQHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 289
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-756340IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.279250286IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-16250300IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-14254313No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14254287IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.34E-15255312No hitNo description
PfamPF003203.1E-16256289IPR000679Zinc finger, GATA-type
PROSITE patternPS003440256281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAGGGPSFAD DFDCGNFFDQ IDDLLDFPDE SCNNNGESGL LCEDFKDFPS IWTQPDTFPG  60
SESVFSGSNS HSASDLSAEL SVPYEDIAEL EWLSTFVEDS FSAGNSLTID VTNSVPSKVV  120
SPSANQFRTS SPVSVLESSS SSYAGGKVMP VKPALPTGGR CGRARSKRPR PSTFSPRPSM  180
QLISPTASFT RPATLFDVGK TGCAEFESFN DTGYSLKMSE SAGKMEHKKK KMKLSADVNQ  240
NKNPNPLSPE VAVRKCQHCE ITKTPQWRAG PLGPKTLCNA CGVRYKSGRL FPEYRPAASP  300
TFVPSVHSNS HKKVLEMRVK ACDRTPLVGD SFKIELIPNK NPLVDYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109479.11e-111GATA transcription factor 8-like
RefseqXP_028109480.11e-111GATA transcription factor 8-like
TrEMBLA0A2N9EQX61e-110A0A2N9EQX6_FAGSY; GATA transcription factor
STRINGPOPTR_0010s23010.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein