PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0323s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 588aa    MW: 65736.1 Da    PI: 6.3738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0323s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12417463455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kalax.0323s0019.1.p 417 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITELQ 463
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-5144232IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.19E-18412477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.876413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-14416467No hitNo description
Gene3DG3DSA:4.10.280.108.9E-18417476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10417463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MGWNEEEKAL IASLLGSRAI DYLLTSLGSG DGGQLMALGS DENLHSKLSD LVERPDSSDF  60
SWNYAIFWQL SRSRNGDMVL VWGDGCCREP MDREELRVGT SCGDRFEDES QQRMRKRVIQ  120
NLHAVLGGFE EDDFVLHLDR VTDTEMFFLA SMYFSFPLGE GGPGMCFKLG MHLWLPDLPA  180
SSRDYCVRSF LAKSAGFQTV VLVPTDMGVV ELGSLRSIPE SLAWVQSLRS LFSMRSQARF  240
NRPLNENILS GKLEHRDEAE GNTKIFGQDI TLGRRSLFRE KLTIRKNEDR PWTACTTPSI  300
IQFPNIQNAS TGWARFCGNK QVNSPGVFTT SANNNSHELV NGTREDFRFN SYQPQKEVQI  360
DFSAAPRQPV VNQPVSAESE HSDVETSCKE AGSSQAVDRR PKKRGRKPAN GREEPLNHVE  420
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT ELQAKLKDLE SERMKLGTAS  480
VTGNTLILES SSITEVQNRV PNVDIESSQD EVVVKVTCPL EAHPANRIIQ AFKEAQMKVV  540
DSKLAVADNT VFHTFVIKSN GRDWLTRERV SAALARDSSK LELSSLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-29411476267Transcription factor MYC2
5gnj_B2e-29411476267Transcription factor MYC2
5gnj_E2e-29411476267Transcription factor MYC2
5gnj_F2e-29411476267Transcription factor MYC2
5gnj_G2e-29411476267Transcription factor MYC2
5gnj_I2e-29411476267Transcription factor MYC2
5gnj_M2e-29411476267Transcription factor MYC2
5gnj_N2e-29411476267Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398406RRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081876.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A167V6C10.0A0A167V6C1_CAMSI; MYC2 trancriptor
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-173bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]