PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0322s0042.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 520aa    MW: 56992.4 Da    PI: 7.6426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0322s0042.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.4e-33195251259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgse+prsYY+Ct++gCp+kkkvers  d++++ei+Y+g+Hnh 
  Kalax.0322s0042.2.p 195 DDGYNWRKYGQKQVKGSENPRSYYKCTFPGCPTKKKVERSL-DGDITEIVYKGSHNHA 251
                          8****************************************.***************7 PP
2WRKY105.72.4e-33364422159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  Kalax.0322s0042.2.p 364 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 422
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29185253IPR003657WRKY domain
SuperFamilySSF1182901.44E-25188253IPR003657WRKY domain
PROSITE profilePS5081124.03189253IPR003657WRKY domain
SMARTSM007744.7E-36194252IPR003657WRKY domain
PfamPF031063.4E-25195250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37349424IPR003657WRKY domain
SuperFamilySSF1182902.62E-29356424IPR003657WRKY domain
PROSITE profilePS5081138.377359424IPR003657WRKY domain
SMARTSM007743.1E-39364423IPR003657WRKY domain
PfamPF031068.1E-26365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAASSANSPF SLSPSFMNNS FSDLLNSPAA VAPGDDSTLL NGSVNRGAPK FKSLHPPSLL  60
PVSPTPASPS SYFAFPPGLS PSELLDSPVL LTSSYLLPSP TTGSFPAAQP HNWRSLSVSG  120
QHDVKPEDSR NQNNTSSYSD FTFQPELRTV SQPWNFKSYQ SQQKTDSISN ERVSGDYSSY  180
QPAPIQSVRE ARRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPGCPTKKK VERSLDGDIT  240
EIVYKGSHNH AKPQSTRRSA SNGSHPMQHV NGELQAQEHS VGSQMVANQL SDHSAATPEN  300
SSVSVGDDDR SSSRRVGDDK LDDDEPDPKR WKRENEGEIM SAPGCRAVRE PRVVVQTTSD  360
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCPVRKH VERASHDLRA VITTYEGKHN  420
HDVPAARGSG SHSRQAAANN SCVTNSTHHQ SSTGQPAAAQ QAPFTLEMLH GPESFGFGNP  480
VSAYNNVNGR QQNPDCSVFP RTKEEPREDQ FLESICYAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37185425878Probable WRKY transcription factor 4
2lex_A2e-37185425878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539942e-54BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142085.11e-174hypothetical protein PHAVU_008G251300g
SwissprotQ6IEQ71e-130WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLV7B8C11e-173V7B8C1_PHAVU; Uncharacterized protein
STRINGXP_007142085.11e-174(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-100WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]