PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0306s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 28896.7 Da PI: 9.0598 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.9 | 1.3e-19 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+q+G ++W++I+r ++ gRt+k+c++rw + Kalax.0306s0004.1.p 15 KGPWSPEEDDALHRLVQQHGARNWSLISRSIP-GRTGKSCRLRWCNQ 60 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.8e-17 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++++G++ W+tIar + gRt++ +k++w++ Kalax.0306s0004.1.p 69 PFSQEEDETIIRAHARFGNK-WATIARFLT-GRTDNAIKNHWNST 111 89******************.********9.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.519 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.16E-32 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-18 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-16 | 17 | 59 | No hit | No description |
PROSITE profile | PS51294 | 20.745 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.42E-12 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 3.1E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAMSCGRRDS SDRIKGPWSP EEDDALHRLV QQHGARNWSL ISRSIPGRTG KSCRLRWCNQ 60 LSPQVQHRPF SQEEDETIIR AHARFGNKWA TIARFLTGRT DNAIKNHWNS TLKRKCSVMQ 120 SGFDVPEPTR PLKRSVSAGA APVDPIQLYP GSPSGSDSSE SSNNGLVRMA SLSEELETSL 180 SLSLSLPGGM TVEQQIAKRI EARMPENGAV ALTAEMMAVM QEMIRKEVRS YMAGMEMCSS 240 GSNTGFRDHM GVSQIGFNKI E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-39 | 14 | 116 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-39 | 14 | 116 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210181.1 | 3e-94 | transcription factor MYB44 | ||||
Swissprot | O23160 | 3e-84 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A444WTM1 | 2e-94 | A0A444WTM1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G21220.1 | 7e-92 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 5e-72 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0306s0004.1.p |
Publications ? help Back to Top | |||
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