PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0294s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 385aa    MW: 43658.4 Da    PI: 8.0528
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0294s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.25.1e-47121362128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          p+GfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+L++k+  +++e yfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Kalax.0294s0015.1.p  12 PAGFRFHPSDEELIVHYLQPKVASRPLPA-SIIAEIDLYKYHPWELHQKALFGDDEFYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKA 100
                          89***************************.89**************98777899************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +++++g+kk Lvfy gr p+  kt+W+m+eyrl
  Kalax.0294s0015.1.p 101 IVTSsGSKTIGVKKALVFYVGRPPT--KTEWMMDEYRL 136
                          *99868889*************999..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-579163IPR003441NAC domain
PROSITE profilePS5100554.95711163IPR003441NAC domain
PfamPF023653.1E-2512136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MERGPGTNFN FPAGFRFHPS DEELIVHYLQ PKVASRPLPA SIIAEIDLYK YHPWELHQKA  60
LFGDDEFYFF SPRDRKYPNG LRPNRAAASG YWKATGTDKA IVTSSGSKTI GVKKALVFYV  120
GRPPTKTEWM MDEYRLPETT KRPSRSKSTM RLDDWVLCRV RQKANTTKNL HRGPDPPKPE  180
SMRYLMQVED SLPAVTNNDN EMFKDDMYKH CPVLTSLLTG KPLRPIDTNQ WASPQEIYTS  240
CGSVYEDGSC SDASPMTVSS FGSSLDPLNG KQMQENSTGI PLPSKYLTNE NENSFFGEAQ  300
KMPSDDDMDL CSYLYYEADV FTPSPSIALH QRTIISANVE EVCGLQSPIH NRHDKKISNA  360
SSWRRRRPAQ IQTLIKPCLV MFQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-6221698171NO APICAL MERISTEM PROTEIN
1ut4_B7e-6221698171NO APICAL MERISTEM PROTEIN
1ut7_A7e-6221698171NO APICAL MERISTEM PROTEIN
1ut7_B7e-6221698171NO APICAL MERISTEM PROTEIN
3swm_A8e-62216911174NAC domain-containing protein 19
3swm_B8e-62216911174NAC domain-containing protein 19
3swm_C8e-62216911174NAC domain-containing protein 19
3swm_D8e-62216911174NAC domain-containing protein 19
3swp_A8e-62216911174NAC domain-containing protein 19
3swp_B8e-62216911174NAC domain-containing protein 19
3swp_C8e-62216911174NAC domain-containing protein 19
3swp_D8e-62216911174NAC domain-containing protein 19
4dul_A7e-6221698171NAC domain-containing protein 19
4dul_B7e-6221698171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362367WRRRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651145.21e-116PREDICTED: NAC domain-containing protein 72-like
SwissprotK4BWV23e-69NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A438DTI41e-115A0A438DTI4_VITVI; NAC transcription factor ONAC010
TrEMBLF6GTZ41e-115F6GTZ4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03080.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-69NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]