PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0291s0010.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 277aa    MW: 31630.6 Da    PI: 8.6435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0291s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-163582148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed ll+++v ++G ++W+ +a+  g++Rt+k+c++rw++yl
  Kalax.0291s0010.2.p 35 KGPWTEQEDFLLANVVGLFGDRRWDFVAKVSGLNRTGKSCRLRWLNYL 82
                         79********************************************97 PP
2Myb_DNA-binding50.45e-1688133148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T  E+ + +++++++G++ W++Iar+++ gRt++++k++w++++
  Kalax.0291s0010.2.p  88 RGKMTSTEERIVLELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 133
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6463082IPR017930Myb domain
SuperFamilySSF466898.99E-2832129IPR009057Homeodomain-like
SMARTSM007174.2E-143484IPR001005SANT/Myb domain
PfamPF002491.4E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-193689IPR009057Homeodomain-like
CDDcd001679.45E-103782No hitNo description
PROSITE profilePS5129425.81683137IPR017930Myb domain
SMARTSM007176.8E-1587135IPR001005SANT/Myb domain
PfamPF002493.2E-1488132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2290136IPR009057Homeodomain-like
CDDcd001672.45E-1090133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MHHSFGFGRQ VISIIGKNKA KTGEEANMMQ QDTRKGPWTE QEDFLLANVV GLFGDRRWDF  60
VAKVSGLNRT GKSCRLRWLN YLHPGLKRGK MTSTEERIVL ELHARWGNRW SRIARRLPGR  120
TDNEIKNYWR THMRKKAQER KRVNYLSITS SESYSSSSNH TQDSLSCSGK ESFYDTGGLA  180
AIAVTGKKQK EEEGERIKMD EIWNDIDISK DTITPLNDSY NQGLCTYSCA PLVSPIWEYC  240
PDPLWRMDED DSKMPPPSND YFQTCCEAGT STLKGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27351374105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-273513758159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-273513758159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27351374105C-Myb DNA-Binding Domain
1msf_C2e-27351374105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016524.21e-104PREDICTED: transcription factor MYB59 isoform X1
SwissprotQ4JL846e-86MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A061GXJ91e-103A0A061GXJ9_THECC; Myb domain protein 59 isoform 2
STRINGVIT_06s0004g04140.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-87myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]