PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0287s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YA | ||||||||
Protein Properties | Length: 343aa MW: 37067.7 Da PI: 8.029 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.3 | 9.1e-32 | 177 | 232 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF Kalax.0287s0010.2.p 177 PPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAIRRARGTGGRF 232 59***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.1E-35 | 174 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.814 | 175 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.7E-27 | 178 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.8E-24 | 178 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 180 | 200 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.8E-24 | 209 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MVYGNMPTKP ESVNRPSIGL HGNPSPAVYS EPWWCSTGYN PAQSVVATVN AGHQPSGSLE 60 SNTVQSFSNS GPNEDDEDND VSKKSQQDAA RQQERSLPGD GNNIMSVALT SATDNCITQQ 120 PQLELVGHSV ACALGPFQDP YYGGLMSAYG PQPMIYPHPL GPQHARMPLP HEVAQEPPVY 180 VNAKQYHGIL RRRQSRAKAE LEKKLIKVRK PYLHESRHQH AIRRARGTGG RFAKKTDAEN 240 GGPAATQSVS SSGSELMPSD SAETWNSPMG RDVAKGSQAQ MQTEQHKQAA TDQNGGYGNG 300 SAFQPASYHS GNRNEENDCS SQQWGSISGN NKATSQRRFA IQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 176 | 232 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446125.1 | 1e-100 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_006446126.1 | 1e-100 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_006446127.1 | 1e-100 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_006446128.1 | 1e-100 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_006470619.1 | 1e-100 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_006470620.1 | 1e-100 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_006470621.1 | 1e-100 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_006470622.1 | 1e-100 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A067F572 | 5e-99 | A0A067F572_CITSI; Uncharacterized protein | ||||
TrEMBL | V4U5J8 | 5e-99 | V4U5J8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470619.1 | 1e-100 | (Citrus sinensis) | ||||
STRING | XP_006446125.1 | 1e-100 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 2e-60 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0287s0010.2.p |