PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0286s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 224aa    MW: 25482.1 Da    PI: 4.5517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0286s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151158148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W ++Edell+  v ++G g+W++ a+t g+ R++k+c++rw++yl
  Kalax.0286s0013.1.p 11 KGPWDEDEDELLKASVIEMGEGRWESLAQTSGLLRSGKSCRLRWLNYL 58
                         79******************************99************97 PP
2Myb_DNA-binding52.31.3e-1665107246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          gr++ eE+e ++++ +qlG++ W++Iar+++ gRt++++k++w++
  Kalax.0286s0013.1.p  65 GRMSVEEEEVIIRLQQQLGNK-WSRIARMLP-GRTDNEIKNYWRT 107
                          799******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.178658IPR017930Myb domain
SuperFamilySSF466892.5E-278105IPR009057Homeodomain-like
SMARTSM007174.2E-121060IPR001005SANT/Myb domain
PfamPF002491.6E-121158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-181265IPR009057Homeodomain-like
CDDcd001671.19E-81358No hitNo description
PROSITE profilePS5129423.61859113IPR017930Myb domain
SMARTSM007171.3E-1463111IPR001005SANT/Myb domain
PfamPF002491.2E-1365107IPR001005SANT/Myb domain
CDDcd001672.53E-1066107No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2266112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MASNQECNLR KGPWDEDEDE LLKASVIEMG EGRWESLAQT SGLLRSGKSC RLRWLNYLRP  60
NLKQGRMSVE EEEVIIRLQQ QLGNKWSRIA RMLPGRTDNE IKNYWRTRVR RQQWENRKLE  120
SYVDGRLSCE QESSSAGTDE SRSMSVSGHN VDKLSIKNIT DDDTHAQTAA SISDFGIACS  180
PYEAWMLADL SNDQCDGEED RIEAGYGSWD VSGESLYSLW ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-23911225127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1U8NNK92e-48A0A1U8NNK9_GOSHI; transcription factor MYB48-like
TrEMBLA0A2P5YGU07e-49A0A2P5YGU0_GOSBA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-45myb domain protein 27