PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0285s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 40065.7 Da PI: 4.7755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Kalax.0285s0017.1.p 14 RGRWTAEEDQILIKYIQDHGEGSWRSLPKNAGLMRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l++++++ lG++ W++Ia+ ++ gRt++++k+rw+++l Kalax.0285s0017.1.p 67 RGNISPQEEDLIIKLHAALGNR-WSLIASQLP-GRTDNEIKNRWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.127 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.65E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.307 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGRAPCCQKV GLKRGRWTAE EDQILIKYIQ DHGEGSWRSL PKNAGLMRCG KSCRLRWINY 60 LRKDLKRGNI SPQEEDLIIK LHAALGNRWS LIASQLPGRT DNEIKNRWNS HLSRSITSWR 120 RPVNDTLPQQ ILDNLAKLMA KPNPSTKKQG SKKNGPANKE TRDKPPVTLE DDNNDKPQTP 180 DVDKESLPTN SWSQQSLQSI FSLEDRYEAE EGEMDMDLGP VDDYGGVLSL SDMVTPSDPS 240 TMMHQQPLSP NEILSPGALY PEFMNELAGL STGHAEMGSA SSWLPNCSTS TMDNTTQPSL 300 SSPSSPFTID HLLNISSDWN WEDCVQTPND QDLIMNHEVG SFDNLSWLWD DGGEFGAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-23 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-23 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891841.1 | 2e-76 | transcription factor MYB30 | ||||
STRING | XP_009622107.1 | 4e-74 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-69 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0285s0017.1.p |