PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0279s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 647aa    MW: 71323.6 Da    PI: 6.2238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0279s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.41.9e-1362806451374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsev 87 
                          lv+lLl+cAeav+++d   a+++L++l++ ++p gd+mqR+aa+fteAL+arla   +++ +++ ++++ ++    s e l+++++++++
  Kalax.0279s0034.1.p 280 LVHLLLACAEAVAKEDYLTARRYLQQLNQVVTPLGDSMQRVAACFTEALSARLAAaLTPKPSSSAACQPFNPFPpnSLEILKIYQILYQA 369
                          68****************************************************9766777777666666644344************** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          +P++kf+h+taNqaI ea+e+e rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e++ etg+ L+++A++l+vpfe
  Kalax.0279s0034.1.p 370 CPYIKFAHFTANQAIFEAFESEMRVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SPEAVMETGRCLTELAHSLHVPFE 455
                          **************************************************************....9*********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          f++ v ++ledl++++L+ + gEalaVn+v +lhr++  +++l +    +L ++++  P++v++veqea+hn++ Fl rfleal++ysa+
  Kalax.0279s0034.1.p 456 FHP-VGEQLEDLKPHMLNRRVGEALAVNSVNRLHRVP--PHCLGN----LLTMIREQAPNIVTIVEQEASHNGPYFLGRFLEALHCYSAI 538
                          ***.7*******************************9..888888....***************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fdsl+a++p++s +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e  GFk+vpls++a++q k ll  ++ dgyr+ e++g+
  Kalax.0279s0034.1.p 539 FDSLDATFPQDSAQRAKVEQYIFAQEIKNIVACEGPERVMRHERLEKWRKIMEGRGFKEVPLSSNAVTQSKILLGLYSCDGYRLTEDKGC 628
                          ****************************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW+dr+++++SaWr
  Kalax.0279s0034.1.p 629 LLLGWQDRAILAASAWR 645
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.258254625IPR005202Transcription factor GRAS
PfamPF035146.6E-134280645IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MNSLRGSLSS LKSEGSSTNT KLQQHQQSFT ASLGELDKPV SSTDLDQTGS SLTLTPSSLN  60
LQGLRFDSGG EVEVQSPDWD SYFADHFDSS DFMISSPALL SPQLVSSYNS CAQGMLMTGC  120
SPPRFAPFGT NHQPKSKGMS PLHKVFNSPS SQFMHIESLT LPAIEEFLND DYSRHDLGAY  180
SLRNAGSSSA MLDHHHAMSM HHQPSRFGRG SGHGSGSTQM GIDQSDVYRM GSMSDCAGVP  240
LSQQLKQEDE QEQQLQHSLN HSLMGTMMAA DQEHDSGLQL VHLLLACAEA VAKEDYLTAR  300
RYLQQLNQVV TPLGDSMQRV AACFTEALSA RLAAALTPKP SSSAACQPFN PFPPNSLEIL  360
KIYQILYQAC PYIKFAHFTA NQAIFEAFES EMRVHVIDLD ILQGYQWPAF MQALAARPGG  420
APFLRITGVG SSPEAVMETG RCLTELAHSL HVPFEFHPVG EQLEDLKPHM LNRRVGEALA  480
VNSVNRLHRV PPHCLGNLLT MIREQAPNIV TIVEQEASHN GPYFLGRFLE ALHCYSAIFD  540
SLDATFPQDS AQRAKVEQYI FAQEIKNIVA CEGPERVMRH ERLEKWRKIM EGRGFKEVPL  600
SSNAVTQSKI LLGLYSCDGY RLTEDKGCLL LGWQDRAILA ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-9828764425377Protein SCARECROW
5b3h_D5e-9828764425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641856.10.0scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A438JCX50.0A0A438JCX5_VITVI; DELLA protein GAI1
TrEMBLD7SVL90.0D7SVL9_VITVI; Uncharacterized protein
STRINGVIT_14s0068g01610.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]