PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0271s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 576aa    MW: 62836.9 Da    PI: 4.7221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0271s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.63e-1392095681374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cAea+++++le a +l++++  la++++ +m+++a+yf+eAL++r+++        ++p+e+   n s +   l  f+e++P+
  Kalax.0271s0018.1.p 209 LVHTLMACAEAIQQSKLEVAGTLVNQIGLLAASQAGAMRKVATYFAEALERRIFN--------CHPQESV--NPSFTDLLLMNFYEACPY 288
                          689***************************************************9........3344443..33333334446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g rLa++Ae+++v+fef+ 
  Kalax.0271s0018.1.p 289 LKFAHFTANQAILEAFSGKKEVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSPDNTDRLREVGLRLAQLAETIHVDFEFRG 378
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L+++p   E++aVn+v++lhrll++++s+e+    vL+++++++P++v+vveqea+hn++ Fl+rf+e+l+yys+lf
  Kalax.0271s0018.1.p 379 FVANSLADLDASMLELNPsaTESIAVNSVFELHRLLARPGSIEK----VLSVIREIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTLF 464
                          ******************99************************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +   +s++++++++++lgr+i+nvvaceg +r+erhetl +Wr r+++aGF+pv+++++a kqa++ll  ++ ++gyrvee++g+
  Kalax.0271s0018.1.p 465 DSLEGS---ASSQDKVISEVYLGRQICNVVACEGPDRVERHETLDQWRLRFGSAGFEPVHIGSNAFKQASMLLDLFSgGEGYRVEENNGC 551
                          ****99...699****************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Kalax.0271s0018.1.p 552 LMLGWHTRPLIATSAWR 568
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.8E-3340113No hitNo description
PfamPF120413.1E-3540105IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.914183547IPR005202Transcription factor GRAS
PfamPF035141.0E-136209568IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKRENQYLYP NPDSSGAGSS RGGKGKVCWE DDPPPESGMD ELLAVLGYKV KSSDMAEVAQ  60
KLEQLEEVMG SVREDGLSHL ASETVHYNPS DISNWIENML SEFVPAGFDS SLQPLPPASV  120
DSFIPQLDSS ASVNFPGFGG GDTSLPDYDL KAIPGNQIIY SPKQQRQIDE LGGNANKRLK  180
TTVTATEAPL TTSTRPVVLV DSQEAGVRLV HTLMACAEAI QQSKLEVAGT LVNQIGLLAA  240
SQAGAMRKVA TYFAEALERR IFNCHPQESV NPSFTDLLLM NFYEACPYLK FAHFTANQAI  300
LEAFSGKKEV HVIDFSMNQG MQWPALMQAL ALRPGGPPAF RLTGIGPPSP DNTDRLREVG  360
LRLAQLAETI HVDFEFRGFV ANSLADLDAS MLELNPSATE SIAVNSVFEL HRLLARPGSI  420
EKVLSVIREI KPEIVTVVEQ EANHNGPVFL DRFTESLHYY STLFDSLEGS ASSQDKVISE  480
VYLGRQICNV VACEGPDRVE RHETLDQWRL RFGSAGFEPV HIGSNAFKQA SMLLDLFSGG  540
EGYRVEENNG CLMLGWHTRP LIATSAWRVG STGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6620456714378Protein SCARECROW
5b3h_A5e-6621656725377Protein SCARECROW
5b3h_D5e-6621656725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594609.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9UFS90.0A0A2C9UFS9_MANES; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein