PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0267s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 380aa    MW: 40406.6 Da    PI: 7.1823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0267s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015280300121
                          EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                          ++C++C+k+Fs+   L  H+r
  Kalax.0267s0006.1.p 280 HSCTICSKVFSSGQALGGHMR 300
                          79************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6682109IPR007087Zinc finger, C2H2
SMARTSM003550.01882104IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-782106IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-883104No hitNo description
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-8206233No hitNo description
PROSITE profilePS501579.806211238IPR007087Zinc finger, C2H2
SMARTSM003551.3211233IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-8211234IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-5280305No hitNo description
SMARTSM003550.017280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702280307IPR007087Zinc finger, C2H2
PfamPF139122.2E-12280304IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNHQSEFHYL SPPLLQQVQP DFPALPPPLE PPPATVFLSE GLTQKQRKKR TKLVPVDSPA  60
SSSGVQKKRY IKPDPAAPKI TRPCSECGKK FWSWKALFGH MRCHPERQWR GINPPPSAAR  120
RSMEGMEVVA AAAPSASAAA GAASSMSMTE EDHEVAACLL LLANGGHAAE FPRLEAACPD  180
TEYESAIVVR HVADAEGAGS AADASETNCK FECSCCKKVF GSHQALGGHR ASHKNVKGCF  240
ANTRPDGEEE GRCAGLGCSS AEPPLPPPGP SSSMALILRH SCTICSKVFS SGQALGGHMR  300
CHWEKMDEPH STHFAPLTPQ CTTGNNPLPT ATASQALDLN MPAPLDHEAS SSSSSGLRLD  360
LSINGYGNLS IEEPGFRPSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645909.15e-94PREDICTED: zinc finger protein ZAT3
TrEMBLA0A438JSY91e-92A0A438JSY9_VITVI; Zinc finger protein ZAT3
STRINGevm.model.supercontig_20.2055e-90(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-68C2H2-like zinc finger protein