PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0263s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 278aa    MW: 30794.3 Da    PI: 8.1866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0263s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13104156155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          r++ah e+Er RR+++ + ++ Lr++lP        +K s ++   +A +YIk+Lq
  Kalax.0263s0048.1.p 104 RKEAHREIERLRRQEMSNLYSSLRSHLPDeY---IRGKRSISDHMNEAANYIKHLQ 156
                          799**************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-15101173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10101171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.018103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-13103160No hitNo description
PfamPF000104.2E-10104156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-5109161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MFPFQRGDEL FQIPHTTHPD NNHIIHHQHQ NQPADGYQDH HHHRIIFMGH DRDDLIPASS  60
STARDAAGSA RGVRGGGRRK SPLLAASASP AGGCGDAQIG SDRRKEAHRE IERLRRQEMS  120
NLYSSLRSHL PDEYIRGKRS ISDHMNEAAN YIKHLQQRNK ELRVKRDELK KGDTSSMTLE  180
PCSSSSARSC AVQVNACWGG VEIVIASGFR DPSPPMPISR VLRALQGDGF SVYSCVSAAV  240
NDSVFHTIQA QVGDDTCLDL PRLQEKLFDV VSSSWRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-40bHLH family protein