PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0262s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25506.3 Da    PI: 10.1652
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0262s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25.3e-291059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRr+g+lKKA+ELS+LCdaev +iifsstg+lye+ss
  Kalax.0262s0043.1.p 10 RIDNSTSRQVTFSKRRKGLLKKAKELSILCDAEVGLIIFSSTGRLYEFSS 59
                         8***********************************************96 PP
2K-box85.21.4e-28821701098
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           +++++ +q+e+a L++++enLq ++R+l+Ge ++ L + eLq Le+qLe slk +R kK+ell++qi++l++k   +++en +L +k 
  Kalax.0262s0043.1.p  82 PTTEMKFWQTEAAMLRQQLENLQDKHRQLMGEAINGLGIHELQALENQLEMSLKGVRMKKHELLTDQIRDLREKGSLMHQENLELCRKA 170
                          567899*****************************************************************************999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32289IPR002100Transcription factor, MADS-box
CDDcd002651.31E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2783169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.16786179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRKGLLK KAKELSILCD AEVGLIIFSS TGRLYEFSST  60
SMKSVIERYN RSKGEGFQLL NPTTEMKFWQ TEAAMLRQQL ENLQDKHRQL MGEAINGLGI  120
HELQALENQL EMSLKGVRMK KHELLTDQIR DLREKGSLMH QENLELCRKA NQVITRDENT  180
EPLARARVHG TTREAPGADT LLAPLTLRPS AEEVRSYHTY ISL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21169169MEF2C
5f28_B6e-21169169MEF2C
5f28_C6e-21169169MEF2C
5f28_D6e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632394.18e-92MADS-box transcription factor 23 isoform X1
RefseqXP_028105064.17e-92MADS-box transcription factor 23-like isoform X2
SwissprotQ9SZJ61e-87AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A200QI411e-90A0A200QI41_9MAGN; Transcription factor
STRINGXP_009595408.13e-91(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.16e-90AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]