PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0259s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 341aa    MW: 37914.1 Da    PI: 8.021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0259s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg WT+eEd +l+ +++q+G+++W++I++  g+ R++k+c++rw +yl
  Kalax.0259s0037.1.p 14 RGQWTPEEDNKLAAYIAQYGTKNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                         89********************************************97 PP
2Myb_DNA-binding38.62.5e-1268135246
                          SSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqk 46 
                          g +T  E++ +v+++   G++                        +W++Ia+ ++ gRt++++k++w++
  Kalax.0259s0037.1.p  68 GQFTDGEEQTIVKVHSVVGNRslsvyvlfvcrdvfwvlicqyyacRWSLIAAQLP-GRTDNDVKNHWNT 135
                          789****************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.35965IPR017930Myb domain
SMARTSM007171.1E-141363IPR001005SANT/Myb domain
PfamPF002492.1E-171461IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-241465IPR009057Homeodomain-like
CDDcd001675.70E-131761No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2065141IPR009057Homeodomain-like
SMARTSM007173.6E-666139IPR001005SANT/Myb domain
PROSITE profilePS5129410.48666141IPR017930Myb domain
PfamPF002498.6E-1068135IPR001005SANT/Myb domain
CDDcd001678.11E-7108137No hitNo description
SuperFamilySSF466894.93E-24109138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRIPCCEKD SVKRGQWTPE EDNKLAAYIA QYGTKNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF TDGEEQTIVK VHSVVGNRSL SVYVLFVCRD VFWVLICQYY ACRWSLIAAQ  120
LPGRTDNDVK NHWNTKLKKK LSGMGIDPVT HKPFSHLMAE IATTLNPPQV AHLAEAALGC  180
FKDEMLHLLT KKPMDFQLQQ SSAGQGNPFI TNKIEQKEDT IEKIKLGLSR AIQEPGMIAA  240
SSKSHWGTSA GNFHGCFPES VPGFQYGGPS FGNSSPWNQS MCTGSTCTAG DQQGRFHDKL  300
EDEIGQESEG GRDIRNSSAI FNSDCVLWDL PSADLMNPMV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141417108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268897.10.0PREDICTED: transcription factor MYB80
SwissprotQ7XQN11e-116MYB80_ORYSJ; Transcription factor MYB80
TrEMBLD7UAP50.0D7UAP5_VITVI; Uncharacterized protein
STRINGVIT_19s0015g01280.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-109myb domain protein 103