PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0258s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 289aa    MW: 32028.9 Da    PI: 7.1659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0258s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W ++Ed+ l  +++  G g+Wk+ +++ g++R++k+c++rw +yl
  Kalax.0258s0028.1.p 14 KGAWCAQEDQALTAYITANGEGSWKSLPQKAGLNRCGKSCRLRWINYL 61
                         799*******************************************97 PP
2Myb_DNA-binding591.1e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +T++Ed+ll++++++lG++ W++Iar+++ gRt++++k++w++ 
  Kalax.0258s0028.1.p  67 RGGFTQDEDDLLIKLHTLLGNR-WALIARRLP-GRTDNEIKNYWNTT 111
                          788*******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.984961IPR017930Myb domain
SuperFamilySSF466896.94E-2811108IPR009057Homeodomain-like
SMARTSM007171.6E-81363IPR001005SANT/Myb domain
PfamPF002493.7E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-201568IPR009057Homeodomain-like
CDDcd001677.26E-61661No hitNo description
PROSITE profilePS5129426.75662116IPR017930Myb domain
SMARTSM007173.5E-1766114IPR001005SANT/Myb domain
PfamPF002496.1E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2669116IPR009057Homeodomain-like
CDDcd001671.93E-1370112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRTPCCAKV GVNKGAWCAQ EDQALTAYIT ANGEGSWKSL PQKAGLNRCG KSCRLRWINY  60
LRPGIKRGGF TQDEDDLLIK LHTLLGNRWA LIARRLPGRT DNEIKNYWNT TLSKKVKKTT  120
TTNNNTVTNN GQPPSPDPQN CHLEFAIKRP SRSIDHHHRN NGDDHQVLHY VKAFRCKKVV  180
LPASLLQAPL SEEEEAGGHQ LMMSNNGGSV SNVENKQQQQ DDDNMIRNDL LIWEDVAGGG  240
DGLISGERSS ISWASFSTED SADLLVSMDC CEDMPDWSAL EKIYGSFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340436.15e-64PREDICTED: myb-related protein 308-like
TrEMBLA0A498HXA71e-62A0A498HXA7_MALDO; Uncharacterized protein
STRINGXP_009340436.12e-63(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-56myb domain protein 4