PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0257s0026.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 388aa    MW: 42988.2 Da    PI: 6.6724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0257s0026.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-3081138260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           DgynWrKYGqK+vkg efprsYY+Ct+++C+vkk +er++ d++++e++Y+g+H h+k
  Kalax.0257s0026.3.p  81 TDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLLERAH-DGRITEVIYKGTHSHPK 138
                          6***************************************9.***************85 PP
2WRKY1031.7e-32244302159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+ +d k v++tYeg+Hnh+
  Kalax.0257s0026.3.p 244 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERACHDIKSVITTYEGKHNHD 302
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2677139IPR003657WRKY domain
SMARTSM007743.3E-3280138IPR003657WRKY domain
SuperFamilySSF1182908.5E-2480139IPR003657WRKY domain
PROSITE profilePS5081122.35581139IPR003657WRKY domain
PfamPF031061.2E-2382137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-37229304IPR003657WRKY domain
SuperFamilySSF1182905.62E-29236304IPR003657WRKY domain
PROSITE profilePS5081138.067239304IPR003657WRKY domain
SMARTSM007746.5E-37244303IPR003657WRKY domain
PfamPF031066.0E-25245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MLGGLGCTAA ASTSCANNSA SVGEIANNSE FGTQSHSSFA SGSSFLLNQR IEGEKAMPSA  60
TVSPSDQNDV RSSSLLDNSS TDGYNWRKYG QKHVKGCEFP RSYYKCTHPN CEVKKLLERA  120
HDGRITEVIY KGTHSHPKPQ SKRRFSNDAA MGMTDEHLER FSYQSEEMAL NSQVATPDMD  180
GTSELPSGPP SDEELNDDKY DDDGDDPNSK RRKQDMGITH FISSVKPIRE PRVVVQTVSE  240
VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCPVRKH VERACHDIKS VITTYEGKHN  300
HDVPSAKASN QEAAAVDPYS GYTSNIGSSM QQNDSVTRVS NHYHQRPPDV RNQYHLEDNE  360
GENFRFATPY LSSNAYPQNL GSLLMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3775305878Probable WRKY transcription factor 4
2lex_A2e-3775305878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644520.11e-109PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV02e-99WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLF6HER41e-108F6HER4_VITVI; Uncharacterized protein
STRINGVIT_19s0090g01720.t011e-109(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.14e-98WRKY family protein